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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 17

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 16 7

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 14 12

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 8 3

Repositories

Showing 10 of 518 repositories
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 14 MIT 12 31 1 Updated Nov 11, 2025
  • aind-vr-foraging-primary-data-nwb-packaging Public

    Capsule that packages primary data for VR Foraging task using data contract

    AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Nov 12, 2025
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 3 MIT 0 13 4 Updated Nov 11, 2025
  • aind-dynamic-foraging-basic-analysis Public

    compute behavioral metrics and generate basic plottings for the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity
    Python 0 MIT 0 19 3 Updated Nov 11, 2025
  • aind-spot-spectral-unmixing Public

    A capsule library for spectrally unmixing spots detected in multichannel lightsheet miscroscopy experiments.

    AllenNeuralDynamics/aind-spot-spectral-unmixing’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Nov 11, 2025
  • aind-vr-foraging-processing-nwb-packaging Public

    Capsule that packages processed data for vr foraging behavior task

    AllenNeuralDynamics/aind-vr-foraging-processing-nwb-packaging’s past year of commit activity
    Jupyter Notebook 0 MIT 0 3 1 Updated Nov 11, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 40 (1 issue needs help) 7 Updated Nov 11, 2025
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Nov 11, 2025
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 1 0 Updated Nov 11, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 8 1 Updated Nov 11, 2025
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