Zero-shot prediction of BRCA1 variant effects with Evo 2 - model.score_sequences

[parkjosh523]

Hi I have a question, is it possible to run the score_sequences function with a window_size of 1,000,000? I am running into OOM error at around 83,450 window_size.

Is there any benefit to using a larger window vs a smaller window? How did you choose window_size 8,192 in the example?

Thanks!

[KhudayarFarmanli]

Hi. I am interested in if you were able to find optimal window_size? I experimented once with 7b checkpoint, window_size=6000 and the results were plausible but I think that higher window size will provide better results.

[rezaya2020]

سلام ا ره تونستم یکم زمان دقیق به دست اوردم ویه اکانت هایی هم تست کردم اندازه رو تا درست شد خوب