fix to gtt-get-accessions-from-GTDB thanks to note from @MariaAVC

Author: AstrobioMike

bin/GToTree

@@ -5,7 +5,7 @@ GREEN='\033[0;32m'
 RED='\033[0;31m'
 YELLOW='\033[0;33m'
 NC='\033[0m'
-VERSION="v1.8.15"
+VERSION="v1.8.16"
 
 if [ "$1" == "--version" ] || [ "$1" == "-v" ]; then
     printf "GToTree ${VERSION}\n"

bin/gtt-gen-SCG-HMMs

@@ -8,7 +8,7 @@ For examples, please visit the GToTree wiki here: https://github.com/AstrobioMik
 For details on the process, please see: https://github.com/AstrobioMike/GToTree/wiki/SCG-sets
 """
 
-VERSION="v1.8.15"
+VERSION="v1.8.16"
 import os
 import re
 import sys

bin/gtt-get-accessions-from-GTDB

@@ -505,11 +505,11 @@ def check_stored_gtdb_up_to_date(location):
 
     # getting latest version info from GTDB
     # gtdb changed from using VERSION to using VERSION.txt at some point, so putting in a try/except to shoot for both in case it's doing a version comparison
-    if args.ecogenomics:
+    if args.use_ecogenomics:
         gtdb_version_link = "https://data.gtdb.ecogenomic.org/releases/latest/VERSION"
     else:
         gtdb_version_link = "https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/VERSION"
-    
+
     try:
         gtdb_version_info = urllib.request.urlretrieve(f"{gtdb_version_link}.txt", location + "GTDB-latest-version-info.txt")
     except:

bin/gtt-pfam-search

@@ -5,7 +5,7 @@ GREEN='\033[0;32m'
 RED='\033[0;31m'
 YELLOW='\033[0;33m'
 NC='\033[0m'
-VERSION="v1.8.15"
+VERSION="v1.8.16"
 
 printf "\n\n                                  GToTree ${VERSION}\n"
 printf "                         (github.com/AstrobioMike/GToTree)\n\n"