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I like maui and explore the possibility of VAEs in a cancer subtyping project, but I am having a hard time to reproduce your vignette results. The issue arises at plotting the losses, I pretty much have no recorded loss, and from then on everything goes south, ROC curves are deflated etc. I wonder if it has anything to do with me using Keras 2.3? I got this user warning:
miniconda3/envs/iomics/lib/python3.7/site-packages/keras/engine/training_utils.py:819: UserWarning: Output reconstruction missing from loss dictionary. We assume this was done on purpose. The fit and evaluate APIs will not be expecting any data to be passed to reconstruction.
'be expecting any data to be passed to {0}.'.format(name))
It almost looks as the fit function doesn't update weights from one epoch to another. Have you encountered such error? I attach my vignette, went a bit past the loss plot and then I stopped testing, but at teh end you can see my pip freeze.
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