diff --git a/core-utilities/src/main/java/edu/illinois/cs/cogcomp/core/datastructures/ViewNames.java b/core-utilities/src/main/java/edu/illinois/cs/cogcomp/core/datastructures/ViewNames.java index fd788635a..963903d63 100644 --- a/core-utilities/src/main/java/edu/illinois/cs/cogcomp/core/datastructures/ViewNames.java +++ b/core-utilities/src/main/java/edu/illinois/cs/cogcomp/core/datastructures/ViewNames.java @@ -132,6 +132,10 @@ public class ViewNames { public static final String POST_ERE = "POST_ERE"; public static final String EVENT_ERE = "EVENT_ERE"; + public static final String FINE_NER_TYPE = "FINE_NER_TYPE"; + public static final String FINE_NER_TYPE_WSD = "FINE_NER_TYPE_WSD"; + public static final String WEB_IS_A = "WEB_IS_A"; + public static final String TRANSLITERATION = "TRANSLITERATION"; public static ViewTypes getViewType(String viewName) { diff --git a/finetyper/pom.xml b/finetyper/pom.xml new file mode 100644 index 000000000..eadc8ce4e --- /dev/null +++ b/finetyper/pom.xml @@ -0,0 +1,57 @@ + + + 4.0.0 + + + illinois-cogcomp-nlp + edu.illinois.cs.cogcomp + 4.0.1 + + + fine-typer + + + + edu.illinois.cs.cogcomp + illinois-core-utilities + 4.0.1 + + + org.cogcomp + cogcomp-datastore + RELEASE + + + net.sf.extjwnl + extjwnl + 1.9.2 + + + net.sf.extjwnl + extjwnl-data-wn30 + 1.2 + + + org.apache.commons + commons-compress + 1.8.1 + + + edu.illinois.cs.cogcomp + illinois-nlp-pipeline + 4.0.0 + test + + + org.slf4j + slf4j-api + 1.7.25 + test + + + + + + \ No newline at end of file diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/FinerResource.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/FinerResource.java new file mode 100644 index 000000000..1234adf11 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/FinerResource.java @@ -0,0 +1,43 @@ +package edu.illinois.cs.cogcomp.finetyper; + +import io.minio.errors.InvalidEndpointException; +import io.minio.errors.InvalidPortException; +import org.apache.commons.compress.archivers.tar.TarArchiveInputStream; +import org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream; +import org.cogcomp.Datastore; +import org.cogcomp.DatastoreException; + +import java.io.*; + +/** + * Created by haowu4 on 2/3/18. + */ +public class FinerResource { + + public static final String FINER_RESOURCE_GROUP_ID = "edu.cogcomp.cs.illinois.finetyper"; + + public static final String WORD_EMBEDDING_TAR_GZ = "word_embedding.txt.tar.gz"; + public static final String SENSE_EMBEDDING_TAR_GZ = "synset_embeddings_300.txt.tar.gz"; + public static final String KB_BIAS_RESOURCE_TAR_GZ = "kbias.txt.tar.gz"; + public static final String WORD_POS_TO_SENSE_TAR_GZ = "word_pos_to_synsets.txt.tar.gz"; + public static final String SYNSET2TYPE_TAR_GZ = "synset2TypeMap.txt.tar.gz"; + + public static InputStream getTarGZInputStrem(File file) throws IOException { + return new TarArchiveInputStream(new GzipCompressorInputStream(new FileInputStream(file))); + } + + public static Datastore getDefaultDatastore() throws DatastoreException { + return new Datastore(); + } + + public static InputStream getResourceInputStream(Datastore dataStore, String name) throws IOException, DatastoreException { + File file = dataStore.getFile( + FinerResource.FINER_RESOURCE_GROUP_ID, name, 1.0); + if (name.endsWith("tar.gz")) { + return getTarGZInputStrem(file); + } + return new FileInputStream(file); + } + + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/Utils.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/Utils.java new file mode 100644 index 000000000..4a5c769d5 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/Utils.java @@ -0,0 +1,29 @@ +package edu.illinois.cs.cogcomp.finetyper; + +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.View; + +import java.util.ArrayList; +import java.util.List; + +/** + * Created by haowu4 on 2/7/18. + */ +public class Utils { + public static List getSentenceConstituents(Sentence sentence, TextAnnotation ta, String viewName) { + List ret = new ArrayList<>(); + int start = sentence.getStartSpan(); + int end = sentence.getEndSpan(); + View view = ta.getView(viewName); + + for (Constituent ct : view.getConstituents()) { + if (ct.getStartSpan() >= start && ct.getEndSpan() < end) { + ret.add(ct); + } + } + return ret; + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerAnnotator.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerAnnotator.java new file mode 100644 index 000000000..4f371b9e6 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerAnnotator.java @@ -0,0 +1,69 @@ +package edu.illinois.cs.cogcomp.finetyper.finer; + +import edu.illinois.cs.cogcomp.annotation.Annotator; +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.*; +import edu.illinois.cs.cogcomp.core.utilities.configuration.ResourceManager; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.IFinerTyper; +import edu.illinois.cs.cogcomp.finetyper.finer.components.mention.MentionDetecter; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; + +import java.util.ArrayList; +import java.util.List; +import java.util.Optional; + +/** + * Created by haowu4 on 1/15/17. + */ +public class FinerAnnotator extends Annotator { + private MentionDetecter mentionDetecter; + private List typers; + + + public FinerAnnotator(MentionDetecter mentionDetecter, List typers) { + super(ViewNames.FINE_NER_TYPE, new String[]{ViewNames.POS, ViewNames.NER_ONTONOTES}); + this.mentionDetecter = mentionDetecter; + this.typers = typers; + } + + public void setMentionDetecter(MentionDetecter mentionDetecter) { + this.mentionDetecter = mentionDetecter; + } + + public void addTyper(IFinerTyper typer) { + this.typers.add(typer); + } + + @Override + public void initialize(ResourceManager rm) { + + } + + public void addView(TextAnnotation ta) { + List fineTypes = this.getAllFineTypeConstituents(ta); + View finalAnnotation = new SpanLabelView(ViewNames.FINE_NER_TYPE, ta); + for (FineTypeConstituent c : fineTypes) { + Optional ret = c.toConstituent(ViewNames.FINE_NER_TYPE); + ret.ifPresent(finalAnnotation::addConstituent); + } + ta.addView(ViewNames.FINE_NER_TYPE, finalAnnotation); + } + + public List getAllFineTypeConstituents(TextAnnotation ta) { + List allCandidates = new ArrayList<>(); + for (int i = 0; i < ta.getNumberOfSentences(); i++) { + Sentence sent = ta.getSentence(i); + List sentence_candidates = mentionDetecter.getMentionCandidates(ta, sent); + for (IFinerTyper typer : this.typers) { + typer.annotate(sentence_candidates, sent); + } + + for (FineTypeConstituent c : sentence_candidates) { + c.finish(); + allCandidates.add(c); + } + } + return allCandidates; + } + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerTyperFactory.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerTyperFactory.java new file mode 100644 index 000000000..5779a8ece --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/FinerTyperFactory.java @@ -0,0 +1,184 @@ +package edu.illinois.cs.cogcomp.finetyper.finer; + +import com.google.gson.Gson; +import com.google.gson.GsonBuilder; +import edu.illinois.cs.cogcomp.finetyper.FinerResource; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.IFinerTyper; +import edu.illinois.cs.cogcomp.finetyper.finer.components.mention.MentionDetecter; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.HypernymTyper; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.KBBiasTyper; +import edu.illinois.cs.cogcomp.finetyper.finer.components.mention.BasicMentionDetection; +import edu.illinois.cs.cogcomp.finetyper.finer.components.mention.TypeMapper; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.NGramPattern; +import edu.illinois.cs.cogcomp.finetyper.finer.components.typers.NGramPatternBasedTyper; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.TypeSystem; +import org.cogcomp.Datastore; +import org.cogcomp.DatastoreException; + +import java.io.*; +import java.util.*; +import java.util.stream.Collectors; + +/** + * Created by haowu4 on 5/16/17. + */ +public class FinerTyperFactory { + public FinerTyperFactory() throws DatastoreException { + this(true); + } + + public FinerTyperFactory(boolean lazyInit) throws DatastoreException { + + this.typers = new ArrayList<>(); + if (!lazyInit) { + this.init(); + } + } + + private void init() throws DatastoreException { + + try (InputStream is = ClassLoader.getSystemResourceAsStream("finer_resource/figer_hier.json")) { + this.typeSystem = TypeSystem.getFromJson(is); + } catch (IOException e) { + e.printStackTrace(); + } + + try (InputStream is = ClassLoader.getSystemResourceAsStream("finer_resource/ontonote_type_mapping.json")) { + this.mentionDetecter = this.getMentionDetecter(is); + } catch (IOException e) { + e.printStackTrace(); + } + + try (InputStream is = ClassLoader.getSystemResourceAsStream("finer_resource/patterndb.txt")) { + this.typers.add(this.getPatternTyper(is)); + } catch (IOException e) { + e.printStackTrace(); + } + + // Now load larger components from Datastore. + Datastore ds = FinerResource.getDefaultDatastore(); + try (InputStream is = FinerResource.getResourceInputStream(ds, FinerResource.SYNSET2TYPE_TAR_GZ)) { + this.typers.add(this.getHypTyper(is)); + } catch (IOException e) { + e.printStackTrace(); + } + + try (InputStream is = FinerResource.getResourceInputStream(ds, FinerResource.KB_BIAS_RESOURCE_TAR_GZ)) { + this.typers.add(this.getKBBiasTyper(is)); + } catch (IOException e) { + e.printStackTrace(); + } + } + + + public FinerAnnotator getAnnotator() throws DatastoreException { + if (this.mentionDetecter == null || this.typers.isEmpty()) { + this.init(); + } + return new FinerAnnotator(this.mentionDetecter, this.typers); + } + + private MentionDetecter getMentionDetecter(InputStream is) { + Gson gson = new GsonBuilder().create(); + Map ret = new HashMap<>(); + + try (BufferedReader reader = + new BufferedReader(new InputStreamReader(is))) { + ret = gson.fromJson(reader, ret.getClass()); + } catch (IOException e) { + e.printStackTrace(); + } + + return new BasicMentionDetection(new TypeMapper(this.typeSystem, ret)); + } + + private IFinerTyper getKBBiasTyper(InputStream is) throws IOException { + Map> map = new HashMap<>(); + BufferedReader reader = new BufferedReader(new InputStreamReader(is)); + String line; + while ((line = reader.readLine()) != null) { + String[] parts = line.split("\\t"); + String pattern = parts[0]; + Map scoreMap = new HashMap<>(); + try { + for (String typeAndScore : parts[1].split(" ")) { + FinerType type = getTypeOrFail(typeAndScore.split(":")[0]); + double score = Double.parseDouble(typeAndScore.split(":")[1]); + scoreMap.put(type, score); + } + map.put(pattern, scoreMap); + } catch (RuntimeException exp) { + System.err.println("[" + line + "] failed to process.."); + } + + } + return new KBBiasTyper(map); + } + + private IFinerTyper getHypTyper(InputStream is) throws IOException { + Map> map = new HashMap<>(); + BufferedReader reader = new BufferedReader(new InputStreamReader(is)); + String line; + while ((line = reader.readLine()) != null) { + String[] parts = line.split("\t"); + String synsetId = parts[0]; + List types = Arrays.stream(parts[1].split(" ")) + .map(this::getType) + .filter(Optional::isPresent) + .map(Optional::get) + .collect(Collectors.toList()); + map.put(synsetId, types); + } + return new HypernymTyper(map); + } + + private IFinerTyper getPatternTyper(InputStream is) throws IOException { + Map> map = new HashMap<>(); + BufferedReader reader = new BufferedReader(new InputStreamReader(is)); + String line; + while ((line = reader.readLine()) != null) { + String[] parts = line.split("\t"); + + int before = Integer.parseInt(parts[0]); + String[] tokens = parts[1].split(" "); + int after = Integer.parseInt(parts[2]); + + NGramPattern pattern = new NGramPattern(before, after, tokens); + + List types = Arrays.stream(parts[3].split(" ")) + .map(this::getType) + .filter(Optional::isPresent) + .map(Optional::get) + .collect(Collectors.toList()); + map.put(pattern, types); + } + return new NGramPatternBasedTyper(map); + + } + + private FinerType getTypeOrFail(String name) { + return this.typeSystem.getTypeOrFail(name); + } + + private Optional getType(String name) { + return this.typeSystem.getType(name); + } + + + private TypeSystem typeSystem = null; + private MentionDetecter mentionDetecter = null; + private List typers = null; + + public void setMentionDetecter(MentionDetecter mentionDetecter) { + this.mentionDetecter = mentionDetecter; + } + + public void setTypers(List typers) { + this.typers = typers; + } + + public List getTypers() { + return typers; + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/BasicMentionDetection.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/BasicMentionDetection.java new file mode 100644 index 000000000..19c7bb8e3 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/BasicMentionDetection.java @@ -0,0 +1,46 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.mention; + +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.finetyper.Utils; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; + +import java.util.ArrayList; +import java.util.HashMap; +import java.util.List; +import java.util.Map; + +/** + * Created by haowu4 on 1/15/17. + *

+ * A FINER mention detection using Ontonotes NER output. + */ +public class BasicMentionDetection implements MentionDetecter { + TypeMapper mapper; + + public BasicMentionDetection(TypeMapper mapper) { + this.mapper = mapper; + } + + @Override + public List getMentionCandidates(TextAnnotation ta, Sentence sentence) { + List ret = new ArrayList<>(); + List ner = Utils.getSentenceConstituents(sentence, ta, ViewNames.NER_ONTONOTES); + for (Constituent c : ner) { + FinerType coarseType = mapper.getType(c.getLabel()); + if (coarseType == null) { + continue; + } + String typeName = coarseType.toString(); + Map l2s = new HashMap<>(); + l2s.put(typeName, 1.0); + FineTypeConstituent mention = new FineTypeConstituent(c); + mention.addCoarseType(coarseType); + ret.add(mention); + } + return ret; + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/MentionDetecter.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/MentionDetecter.java new file mode 100644 index 000000000..67efedc3a --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/MentionDetecter.java @@ -0,0 +1,14 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.mention; + +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; + +import java.util.List; + +/** + * Created by haowu4 on 1/15/17. + */ +public interface MentionDetecter { + List getMentionCandidates(TextAnnotation ta, Sentence sentence); +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/TypeMapper.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/TypeMapper.java new file mode 100644 index 000000000..a476b4166 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/mention/TypeMapper.java @@ -0,0 +1,31 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.mention; + +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.TypeSystem; + +import java.util.Map; + +/** + * Created by haowu4 on 5/17/17. + *

+ * Map a given string to one of the type in a fine type taxonomy. + */ +public class TypeMapper { + TypeSystem types; + Map mapping; + + public TypeMapper(TypeSystem types, Map mapping) { + this.types = types; + this.mapping = mapping; + } + + public FinerType getType(String label) { + String tname = mapping.getOrDefault(label, null); + if (tname != null) + return types.getTypeOrFail(tname); + else { + return null; + } + } + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/HypernymTyper.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/HypernymTyper.java new file mode 100644 index 000000000..d146bf3a6 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/HypernymTyper.java @@ -0,0 +1,80 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.typers; + +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.View; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; +import edu.illinois.cs.cogcomp.finetyper.finer.wordnet.WordNetUtils; +import net.sf.extjwnl.JWNLException; +import net.sf.extjwnl.data.Synset; + +import java.util.ArrayList; +import java.util.List; +import java.util.Map; + +/** + * Created by haowu4 on 5/21/17. + */ +public class HypernymTyper implements IFinerTyper { + Map> typeToSynsets; + WordNetUtils wordNetUtils; + + public HypernymTyper(Map> typeToSynsets) { + this.typeToSynsets = typeToSynsets; + try { + wordNetUtils = WordNetUtils.getInstance(); + } catch (JWNLException e) { + e.printStackTrace(); + } + } + + public void annotateOneMention(FineTypeConstituent mention) throws JWNLException { + FinerType coarseType = mention.getCoarseType(); + int start = mention.getConstituent().getStartSpan(); + int end = mention.getConstituent().getEndSpan(); + if (start > 0) { + Constituent word_before = mention.getConstituent().getTextAnnotation().getView(ViewNames.TOKENS).getConstituents().get(start - 1); + if (word_before.getSentenceId() == mention.getConstituent().getSentenceId()) { + start = start - 1; + } + } + + View wsdView = mention.getConstituent().getTextAnnotation().getView(ViewNames.FINE_NER_TYPE_WSD); + View posView = mention.getConstituent().getTextAnnotation().getView(ViewNames.POS); + + for (Constituent c : wsdView.getConstituentsCoveringSpan(start, end)) { + if (posView.getConstituentsCovering(c).get(0).getLabel().startsWith("N")) { + if (c.getLabel().isEmpty()) { + continue; + } + Synset synset; + try { + synset = wordNetUtils.getSynsetByOffset(c.getLabel()); + } catch (ArrayIndexOutOfBoundsException e) { + System.err.println(c.getLabel() + " Not Found..."); + continue; + } + String synset_offset_pos = synset.getOffset() + "" + synset.getPOS(); + List infered = typeToSynsets.getOrDefault(synset_offset_pos, new ArrayList<>()); + for (FinerType t : infered) { + if (t.isChildOf(coarseType)) { + mention.addFineType(t); + } + } + } + } + } + + @Override + public void annotate(List mentions, Sentence sentence) { + for (FineTypeConstituent m : mentions) { + try { + annotateOneMention(m); + } catch (Exception e) { + e.printStackTrace(); + } + } + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/IFinerTyper.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/IFinerTyper.java new file mode 100644 index 000000000..bfaacc8dd --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/IFinerTyper.java @@ -0,0 +1,13 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.typers; + +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; + +import java.util.List; + +/** + * Created by haowu4 on 5/15/17. + */ +public interface IFinerTyper { + void annotate(List mentions, Sentence sentence); +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/KBBiasTyper.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/KBBiasTyper.java new file mode 100644 index 000000000..93c6251dd --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/KBBiasTyper.java @@ -0,0 +1,64 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.typers; + +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; + +import java.util.*; +import java.util.stream.Collectors; + +/** + * Created by haowu4 on 5/15/17. + */ +public class KBBiasTyper implements IFinerTyper { + Map> surfaceToTypeDB; + + public KBBiasTyper(Map> surfaceToTypeDB) { + this.surfaceToTypeDB = surfaceToTypeDB; + } + + public List annotateSingleMention(Constituent mention, FinerType coarseType) { + Set ret = new HashSet<>(); + String surface = mention.getSurfaceForm(); + Map candidates = surfaceToTypeDB.getOrDefault(surface, new HashMap<>()); + + double bestScore = Double.NEGATIVE_INFINITY; + FinerType bestType = null; + double norm = 0.0; + + for (Map.Entry entry : candidates.entrySet()) { + FinerType t = entry.getKey(); + double v = entry.getValue(); + if (coarseType.isParentOf(t)) { + if (v == 1.0) { + ret.add(t); + } else { + norm += v; + if (bestScore < v) { + bestScore = v; + bestType = t; + } + } + } + } + + if (bestType != null && bestScore / norm > 0.4) { + ret.add(bestType); + } + + return ret.stream().collect(Collectors.toList()); + + } + + @Override + public void annotate(List mentions, Sentence sentence) { + for (FineTypeConstituent mention : mentions) { + List annotated = annotateSingleMention(mention.getConstituent(), mention.getCoarseType()); + for (FinerType t : annotated) { + mention.addFineType(t); + } + } + + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPattern.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPattern.java new file mode 100644 index 000000000..8d651b7de --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPattern.java @@ -0,0 +1,66 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.typers; + +import java.util.Arrays; + +/** + * Created by haowu4 on 5/15/17. + */ +public class NGramPattern { + private int before; + private int after; + private String[] tokens; + + public NGramPattern(int before, int after, String[] tokens) { + this.before = before; + this.after = after; + this.tokens = tokens; + } + + public int getBefore() { + return before; + } + + public int getAfter() { + return after; + } + + public String[] getTokens() { + return tokens; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + NGramPattern that = (NGramPattern) o; + + if (before != that.before) return false; + if (after != that.after) return false; + // Probably incorrect - comparing Object[] arrays with Arrays.equals + return Arrays.equals(tokens, that.tokens); + } + + @Override + public int hashCode() { + int result = before; + result = 31 * result + after; + result = 31 * result + Arrays.hashCode(tokens); + return result; + } + + @Override + public String toString() { + StringBuilder sb = new StringBuilder(); + for (int i = 0; i < before; i++) { + sb.append("* "); + } + + sb.append(String.join(" ", tokens)); + + for (int i = 0; i < after; i++) { + sb.append(" *"); + } + return sb.toString(); + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPatternBasedTyper.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPatternBasedTyper.java new file mode 100644 index 000000000..b75cd3d83 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/components/typers/NGramPatternBasedTyper.java @@ -0,0 +1,75 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.components.typers; + +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.FineTypeConstituent; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Map; + +/** + * Created by haowu4 on 5/15/17. + */ +public class NGramPatternBasedTyper implements IFinerTyper { + + private Map> allPatterns; + private int windowSize = 5; + + public NGramPatternBasedTyper(Map> allPatterns) { + this(allPatterns, 5); + } + + public NGramPatternBasedTyper(Map> allPatterns, int windowSize) { + this.allPatterns = allPatterns; + this.windowSize = windowSize; + } + + public List extractAllPattern(String[] surface) { + List ret = new ArrayList<>(); + for (int i = 0; i < surface.length; i++) { + String w = surface[i]; + int word_before = i; + for (int j = 0; j < this.windowSize; j++) { + int word_after = surface.length - i - j; + if (word_after < 0) { + break; + } + + NGramPattern sp = new NGramPattern(word_before, word_after, Arrays.copyOfRange(surface, i, i + j)); + ret.add(sp); + } + } + return ret; + } + + public void annotateOneMention(FineTypeConstituent c) { + FinerType coarseType = c.getCoarseType(); + int start = c.getConstituent().getStartSpan(); + int end = c.getConstituent().getEndSpan(); + String[] surface = new String[end - start]; + TextAnnotation ta = c.getConstituent().getTextAnnotation(); + for (int i = 0; i < surface.length; i++) { + surface[i] = ta.getToken(start + i); + } + + List existing_patterns = extractAllPattern(surface); + + for (NGramPattern sp : existing_patterns) { + for (FinerType t : allPatterns.getOrDefault(sp, new ArrayList<>())) { + if (t.isChildOf(coarseType)) { + c.addFineType(t); + } + } + } + } + + @Override + public void annotate(List mentions, Sentence sentence) { + for (FineTypeConstituent mention : mentions) { + annotateOneMention(mention); + } + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/FineTypeConstituent.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/FineTypeConstituent.java new file mode 100644 index 000000000..036e69c1a --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/FineTypeConstituent.java @@ -0,0 +1,79 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.datastructure; + +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.FinerType; + +import java.util.*; +import java.util.stream.Collectors; + +/** + * Created by haowu4 on 5/17/17. + */ +public class FineTypeConstituent { + + private Constituent constituent; + private FinerType coarseType; + private Set fineTypes; + private Map labelsToScores; + + private static Map getLablToScore() { + Map ret = new HashMap(); + ret.put("FinerType", 1.0); + return ret; + } + + public FineTypeConstituent(Constituent constituent) { + this.constituent = constituent; + this.fineTypes = new HashSet<>(); + this.labelsToScores = new HashMap<>(); + } + + + public void addFineType(FinerType t) { + this.fineTypes.add(t); + } + + public void addCoarseType(FinerType t) { + this.coarseType = t; + } + + + public FinerType getCoarseType() { + return coarseType; + } + + public void finish() { + this.labelsToScores.clear(); + for (FinerType t : this.fineTypes) { + if (t.isVisible()) { + this.labelsToScores.put(t, 1.0); + } + } + + if (this.coarseType.isVisible()) { + this.labelsToScores.put(this.coarseType, 1.0); + } + } + + + public Optional toConstituent(String viewName) { + this.finish(); + if (labelsToScores.isEmpty()) { + return Optional.empty(); + } else { + Map labelStrToScores = labelsToScores + .entrySet() + .stream() + .collect(Collectors.toMap(x -> x.getKey().getType(), Map.Entry::getValue)); + return Optional.of(new Constituent(labelStrToScores, + viewName, + this.constituent.getTextAnnotation(), + constituent.getStartSpan(), constituent.getEndSpan())); + } + + } + + public Constituent getConstituent() { + return constituent; + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/FinerType.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/FinerType.java new file mode 100644 index 000000000..f55a414ef --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/FinerType.java @@ -0,0 +1,126 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types; + +import net.sf.extjwnl.data.Synset; + +import java.util.ArrayList; +import java.util.List; + +/** + * Created by haowu4 on 5/15/17. + */ +public class FinerType { + private TypeSystem typeSystem; + private String type; + private boolean isVisible; + private FinerType parent; + private List children; + private List wordnetIds; + + FinerType(String name, boolean isVisible) { + this.typeSystem = null; + this.type = name; + this.isVisible = isVisible; + this.parent = null; + this.children = new ArrayList<>(); + this.wordnetIds = new ArrayList<>(); + } + + public boolean isVisible() { + return isVisible; + } + + public void setVisible(boolean visible) { + isVisible = visible; + } + + public TypeSystem getTypeSystem() { + return typeSystem; + } + + public void setTypeSystem(TypeSystem typeSystem) { + this.typeSystem = typeSystem; + } + + public String getType() { + return type; + } + + public void setType(String type) { + this.type = type; + } + + public FinerType getParent() { + return parent; + } + + public void setParent(FinerType parent) { + this.parent = parent; + } + + public List getChildren() { + return children; + } + + public void addChildren(FinerType child) { + this.children.add(child); + } + + public boolean isParentOf(FinerType t) { + FinerType it = t.parent; + while (it != null) { + if (it.equals(this)) { + return true; + } + it = it.parent; + } + return false; + } + + public boolean isParentOfOrEqual(FinerType t) { + FinerType it = t; + while (it != null) { + if (it.equals(this)) { + return true; + } + it = it.parent; + } + return false; + } + + public boolean isChildOf(FinerType t) { + return t.isParentOf(this); + } + + public boolean isChildOfOrEqual(FinerType t) { + return t.isParentOfOrEqual(this); + } + + public boolean isCoarseType(FinerType t) { + return this.parent == null; + } + + public List wordNetSenseIds() { + return this.wordnetIds; + } + + public void addWordNetSenseId(Synset senseId) { + this.wordnetIds.add(senseId); + } + + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + FinerType finerType = (FinerType) o; + + return type.equals(finerType.type); + } + + + @Override + public int hashCode() { + return type.hashCode(); + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/TypeSystem.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/TypeSystem.java new file mode 100644 index 000000000..c203c859c --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/datastructure/types/TypeSystem.java @@ -0,0 +1,106 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types; + +import com.google.gson.Gson; +import com.google.gson.GsonBuilder; + +import java.io.BufferedReader; +import java.io.IOException; +import java.io.InputStream; +import java.io.InputStreamReader; +import java.util.*; + +/** + * Created by haowu4 on 5/15/17. + */ +public class TypeSystem { + + // IO related helper class. + private static class TypeInfo { + String parent; + boolean is_figer_type; + } + + private static class TypeInfos { + Map typeInfos; + } + + public static TypeSystem getFromJson(InputStream is) throws IOException { + + + Gson gson = new GsonBuilder().create(); + TypeInfos load = null; + try (BufferedReader reader = + new BufferedReader(new InputStreamReader(is))) { + load = gson.fromJson(reader, TypeInfos.class); + } + Map typeCollection = new HashMap<>(); + Set invisiableTypes = new HashSet<>(); + for (Map.Entry entry : load.typeInfos.entrySet()) { + String typeName = entry.getKey(); + TypeInfo info = entry.getValue(); + FinerType type = new FinerType(typeName, info.is_figer_type); + typeCollection.put(typeName, type); + } + + for (Map.Entry entry : load.typeInfos.entrySet()) { + String typeName = entry.getKey(); + TypeInfo info = entry.getValue(); + + FinerType currentType = typeCollection.get(typeName); + if (!currentType.isVisible()) { + invisiableTypes.add(currentType); + } + String parentName = info.parent; + if (parentName != null) { + FinerType parentType = typeCollection.get(parentName); + parentType.addChildren(currentType); + currentType.setParent(parentType); + } + } + + TypeSystem typeSystem = new TypeSystem(typeCollection, invisiableTypes); + + for (FinerType type : typeCollection.values()) { + type.setTypeSystem(typeSystem); + } + + return typeSystem; + } + + public TypeSystem(Map typeCollection, Set invisiableTypes) { + this.typeCollection = typeCollection; + this.invisiableTypes = invisiableTypes; + } + + private Map typeCollection; + private Set invisiableTypes; + + public FinerType getTypeOrFail(String name) { + if (typeCollection.containsKey(name)) { + FinerType t = typeCollection.get(name); + if (t != null) { + return t; + } else { + throw new RuntimeException("Type [" + name + "] is NULL."); + } + } else { + throw new RuntimeException("Type [" + name + "] Not Found"); + } + } + + public Set failedQueries = new HashSet<>(); + + public Optional getType(String name) { + FinerType t = typeCollection.get(name); + if (t == null) { + if (!failedQueries.contains(name)) { + failedQueries.add(name); + System.err.println("Type [" + name + "] Not Found"); + } + return Optional.empty(); + } else { + return Optional.of(t); + } + } + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/wordnet/WordNetUtils.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/wordnet/WordNetUtils.java new file mode 100644 index 000000000..ea6f32e81 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/finer/wordnet/WordNetUtils.java @@ -0,0 +1,214 @@ +package edu.illinois.cs.cogcomp.finetyper.finer.wordnet; + +import net.sf.extjwnl.JWNLException; +import net.sf.extjwnl.data.*; +import net.sf.extjwnl.data.list.PointerTargetTree; +import net.sf.extjwnl.data.list.PointerTargetTreeNode; +import net.sf.extjwnl.dictionary.Dictionary; + +import java.io.IOException; +import java.util.*; + +/** + * Created by muddire2 on 1/10/17. + */ +public class WordNetUtils { + + private static WordNetUtils WORD_NET_UTILS; + private static final Object lock = new Object(); + public Dictionary dictionary; + private Synset entitySynset; + + private WordNetUtils() throws JWNLException { + dictionary = Dictionary.getDefaultResourceInstance(); + entitySynset = getSynsets("entity").get(0); + } + + public static WordNetUtils getInstance() throws JWNLException { + synchronized (WordNetUtils.class) { + if (WORD_NET_UTILS == null) + WORD_NET_UTILS = new WordNetUtils(); + } + return WORD_NET_UTILS; + } + + public static WordNetUtils getInstanceFastOrNull() { + return WORD_NET_UTILS; + } + + + public List getSynsets(String lemma, POS pos) throws JWNLException { + IndexWord w = dictionary.lookupIndexWord(pos, lemma); + return (w == null) ? new ArrayList<>() : w.getSenses(); + } + + public List getSynsets(String lemma) throws JWNLException { + return getSynsets(lemma, POS.NOUN); + } + + public PointerTargetTree getHyponymTree(Synset synset) throws JWNLException { + PointerTargetTree hyponymTree = PointerUtils.getHyponymTree(synset); + return hyponymTree; + } + + public POS getPOS(String posString) { + POS pos = null; + switch (posString) { + case "n": + pos = POS.NOUN; + break; + case "v": + pos = POS.VERB; + break; + case "a": + pos = POS.ADJECTIVE; + break; + case "s": + pos = POS.ADVERB; + break; + default: + throw new IllegalArgumentException("Invalid POS string - " + posString); + } + return pos; + } + + public Synset getSynsetFromNLTKString(String nltkSynsetString) throws JWNLException { + String[] tokens = nltkSynsetString.split("\\."); + assert tokens.length == 3; + String lemma = tokens[0]; + POS pos = getPOS(tokens[1]); + int id = Integer.parseInt(tokens[2]) - 1; + IndexWord w = dictionary.lookupIndexWord(pos, lemma); + if (w == null) + throw new IllegalArgumentException("Word/Lemma not found in wordnet - " + nltkSynsetString); + if (id >= w.getSenses().size()) + throw new IllegalArgumentException("Invalid word sense index - " + nltkSynsetString); + return w.getSenses().get(id); + } + + public List getPointers(Synset synset, PointerType type) { + List pointers = new ArrayList<>(); + // strict matching i.e. instance hyponyms not in hyponyms + for (Pointer p : synset.getPointers(type)) + if (p.getType().getKey().equals(type.getKey())) + pointers.add(p); + return pointers; + } + + public Synset getFirstInTree(Synset targetSynset, PointerTargetTree tree) { + Queue bfsQueue = new LinkedList<>(); + bfsQueue.add(tree.getRootNode()); + PointerTargetTreeNode curNode; + PointerTargetTreeNode result = null; + while (result == null && bfsQueue.size() > 0) { + curNode = bfsQueue.remove(); + if (curNode.hasValidChildTreeList()) + bfsQueue.addAll(curNode.getChildTreeList()); + if (curNode.getSynset().equals(targetSynset)) + result = curNode; + } + return (result == null) ? null : result.getSynset(); + } + + private String synsetToString(Synset synset) { + StringBuilder words = new StringBuilder(); + + words.append("( "); + for (int i = 0; i < synset.getWords().size(); ++i) { + if (i > 0) { + words.append(", "); + } + + words.append(((Word) synset.getWords().get(i)).getLemma()); + } + words.append(" )"); + + return words.toString(); + } + + private void recurseForward(Synset n, Synset t, Map sn) throws JWNLException { + sn.put(n, sn.getOrDefault(n, 0) + 1); + for (Pointer hypPointer : getPointers(n, PointerType.HYPERNYM)) { + Synset c = hypPointer.getTargetSynset(); + recurseForward(c, t, sn); + } + } + + private int recurseBackward(Synset n, Synset t, Map nt) throws JWNLException { + int tmp = 0; + for (Pointer hypPointer : getPointers(n, PointerType.HYPERNYM)) { + Synset c = hypPointer.getTargetSynset(); + if (!nt.containsKey(c)) + nt.put(c, recurseBackward(c, t, nt)); + tmp += nt.get(c); + } + nt.put(n, Math.max(1, tmp)); + return nt.get(n); + } + + private Map getSynsetScores(Synset synset) throws JWNLException { +// assert synset.getPOS() == POS.NOUN; + if (synset.getPOS() != POS.NOUN) + return new HashMap<>(); + Map synsetScores = new HashMap<>(); + + Map sn = new HashMap<>(); + Map nt = new HashMap<>(); + + recurseForward(synset, entitySynset, sn); + recurseBackward(synset, entitySynset, nt); + + int numPaths = nt.get(synset); +// System.out.println("Number of paths = " + numPaths); + + for (Synset countSynset : nt.keySet()) + synsetScores.put(countSynset, (double) nt.get(countSynset) * sn.get(countSynset) / numPaths); + + return synsetScores; + } + + private Map getTypeScores(Synset synset, Map> typeToSynsets) throws JWNLException { + Map synsetScores = getSynsetScores(synset); + Map typeScores = new HashMap<>(); + for (String type : typeToSynsets.keySet()) { + double typeScore = 0; + for (Synset typeSynset : typeToSynsets.get(type)) + if (synsetScores.containsKey(typeSynset)) + typeScore += synsetScores.get(typeSynset); + if (typeScore == 0.0) { + continue; + } + typeScores.put(type, typeScore); + } + return typeScores; + } + + public Map getTypeScores(String synsetOffsetPOS, + Map> typeToSynsets) throws JWNLException { + Synset synset = getSynsetByOffset(synsetOffsetPOS); + return getTypeScores(synset, typeToSynsets); + } + + public Synset getSynsetOfNoun(String readableName) throws JWNLException { + String[] parts = readableName.split("\\."); + int idx = Integer.valueOf(parts[2]); + Synset synset = dictionary.lookupIndexWord(POS.NOUN, parts[0]).getSenses().get(idx - 1); + + return synset; + } + + public Synset getSynsetByOffset(String synsetOffsetPOS) throws JWNLException { + String[] tokens = synsetOffsetPOS.split("_"); + POS synsetPOS = getPOS(tokens[1]); + long synsetOffset = Long.parseLong(tokens[0]); + Synset synset = dictionary.getSynsetAt(synsetPOS, synsetOffset); + return synset; + } + + public static void main(String[] args) throws JWNLException, CloneNotSupportedException, IOException { + WordNetUtils wordNetUtils = WordNetUtils.getInstance(); + + Synset quellSynset = wordNetUtils.getSynsets("quell", POS.VERB).get(0); + System.out.println(quellSynset.getPOS()); + } +} \ No newline at end of file diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/WordSenseAnnotator.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/WordSenseAnnotator.java new file mode 100644 index 000000000..c54d87e0c --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/WordSenseAnnotator.java @@ -0,0 +1,194 @@ +package edu.illinois.cs.cogcomp.finetyper.wsd; + +import edu.illinois.cs.cogcomp.annotation.Annotator; +import edu.illinois.cs.cogcomp.annotation.AnnotatorException; +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.View; +import edu.illinois.cs.cogcomp.core.utilities.configuration.ResourceManager; +import edu.illinois.cs.cogcomp.finetyper.FinerResource; +import edu.illinois.cs.cogcomp.finetyper.wsd.datastructure.WordAndPOS; +import edu.illinois.cs.cogcomp.finetyper.wsd.embedding.EmbeddingSpace; +import edu.illinois.cs.cogcomp.finetyper.wsd.math.FloatDenseVector; +import edu.illinois.cs.cogcomp.finetyper.wsd.math.Similarity; +import org.cogcomp.Datastore; +import org.cogcomp.DatastoreException; + +import java.io.*; +import java.util.ArrayList; +import java.util.HashMap; +import java.util.List; +import java.util.Map; + + +/** + * Created by haowu4 on 1/13/17. + */ + +public class WordSenseAnnotator extends Annotator { + + public static final String ANNOTATOR_NAME = "EmbeddingWSDAnnotator"; + public final String VIEWNAME; + + private EmbeddingSpace wordEmbeddings; + private EmbeddingSpace senseEmbeddings; + private Map> candidatesMaps; + + private List wordToSense(String w, String pos) { + return candidatesMaps.getOrDefault(new WordAndPOS(w, pos), new + ArrayList()); + } + + public WordSenseAnnotator(String viewName, ResourceManager rm) { + super(viewName, new String[]{ViewNames.POS}, rm); + VIEWNAME = rm.getString("fine_type_wsd_viewname", ViewNames.FINE_NER_TYPE_WSD); + } + + + @Override + public void initialize(ResourceManager rm) { + + try { + Datastore ds = FinerResource.getDefaultDatastore(); + + // Read word embedding. + + try (InputStream input = FinerResource.getResourceInputStream(ds, FinerResource.WORD_EMBEDDING_TAR_GZ)) { + wordEmbeddings = EmbeddingSpace.readEmbeddingStream(input); + } catch (IOException e) { + e.printStackTrace(); + System.err.println("Having trouble reading important resources WORD_EMBEDDING_TAR_GZ."); + } + + + // Read sense embedding. + try (InputStream input = FinerResource.getResourceInputStream(ds, FinerResource.SENSE_EMBEDDING_TAR_GZ)) { + senseEmbeddings = EmbeddingSpace.readEmbeddingStream(input); + } catch (IOException e) { + e.printStackTrace(); + System.err.println("Having trouble reading important resources SENSE_EMBEDDING_TAR_GZ."); + } + + + candidatesMaps = new HashMap<>(); + + try (InputStream inputStream = FinerResource.getResourceInputStream(ds, FinerResource.WORD_POS_TO_SENSE_TAR_GZ)) { + try (BufferedReader br = new BufferedReader(new InputStreamReader(inputStream))) { + + String line; + + while ((line = br.readLine()) != null) { + String trimedLine = line.trim(); + if (trimedLine.isEmpty()) { + continue; + } + + String[] parts = trimedLine.split("\t"); + String word = parts[0]; + String pos = parts[1]; + String[] senses = parts[2].split(" "); + WordAndPOS key = new WordAndPOS(word, pos); + List candidates = candidatesMaps.getOrDefault(key, new + ArrayList()); + for (String s : senses) { + candidates.add(s); + } + candidatesMaps.put(key, candidates); + } + } catch (IOException e) { + e.printStackTrace(); + System.err.println("Having trouble reading important resources WORD_POS_TO_SENSE_TAR_GZ."); + } + } catch (IOException e) { + e.printStackTrace(); + System.err.println("Having trouble reading important resources WORD_POS_TO_SENSE_TAR_GZ."); + } + + + } catch (DatastoreException e) { + e.printStackTrace(); + System.err.println("Having trouble connecting to Datastore."); + } + + + } + + @Override + public void addView(TextAnnotation ta) throws AnnotatorException { + View v = new View(VIEWNAME, ANNOTATOR_NAME, ta, 1.0); + View tokens = ta.getView(ViewNames.TOKENS); + for (Sentence sentence : ta.sentences()) { + int startTokenId = sentence.getStartSpan(); + int endTokenId = sentence.getStartSpan(); + for (int i = startTokenId; i < endTokenId; i++) { + Constituent ct = tokens.getConstituents().get(i); + Map result = predict(sentence, ct); + if (result.isEmpty()) continue; + v.addConstituent(new Constituent(result, VIEWNAME, ta, ct + .getStartSpan(), ct.getEndSpan())); + } + } + ta.addView(VIEWNAME, v); + } + + /** + * Map Part of speech to the convention used in the sense embedding. + * + * @param pos String of POS tag, such as VB. + * @return + */ + public static String mapPOS(String pos) { + switch (pos.toLowerCase().charAt(0)) { + case 'v': + return "v"; + case 'n': + return "n"; + default: + return ""; + } + } + + /** + * Predict the sense of a token based on the cosine similarity of sense embedding and average word embedding in + * the sentence. + * + * @param sentence Sentence that contains the given constituent. + * @param ct The given constituent + * @return + */ + public Map predict(Sentence sentence, Constituent ct) { + Map result = new HashMap<>(); + + String query = ct.getSurfaceForm(); + String pos = ct.getTextAnnotation().getView(ViewNames.POS) + .getConstituentsCovering(ct).get(0).getLabel(); + List senses = wordToSense(query, mapPOS(pos)); + + if (senses.isEmpty()) { + return result; + } + + FloatDenseVector sentenceEmbedding = wordEmbeddings.getEmbeddingOrNull(sentence); + + + if (sentenceEmbedding == null) { + return result; + } + + double normOfSentence = Similarity.l2norm(sentenceEmbedding); + for (String s : senses) { + FloatDenseVector senseEmbedding = senseEmbeddings.getEmbeddingOrNull(s); + if (senseEmbedding == null) continue; + double sim = Similarity.cosine(sentenceEmbedding, senseEmbedding, + normOfSentence, + Similarity.l2norm(senseEmbedding)); + result.put(s, sim); + } + + return result; + } + + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/datastructure/WordAndPOS.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/datastructure/WordAndPOS.java new file mode 100644 index 000000000..3aa40d0df --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/datastructure/WordAndPOS.java @@ -0,0 +1,42 @@ +package edu.illinois.cs.cogcomp.finetyper.wsd.datastructure; + + +/** + * Created by haowu4 on 2/6/18. + * Pair of word and its part of speech tag. + */ +public class WordAndPOS { + private String word; + private String pos; + + public WordAndPOS(String word, String pos) { + this.word = word; + this.pos = pos; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + WordAndPOS that = (WordAndPOS) o; + + if (!word.equals(that.word)) return false; + return pos.equals(that.pos); + } + + @Override + public int hashCode() { + int result = word.hashCode(); + result = 31 * result + pos.hashCode(); + return result; + } + + public String getWord() { + return word; + } + + public String getPos() { + return pos; + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/embedding/EmbeddingSpace.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/embedding/EmbeddingSpace.java new file mode 100644 index 000000000..327437866 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/embedding/EmbeddingSpace.java @@ -0,0 +1,109 @@ +package edu.illinois.cs.cogcomp.finetyper.wsd.embedding; + + +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Sentence; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.View; +import edu.illinois.cs.cogcomp.finetyper.wsd.math.FloatDenseVector; + +import java.io.*; +import java.util.*; + +/** + * Created by haowu4 on 1/14/17. + * A Embedding manager. + */ +public class EmbeddingSpace { + + Map entryToId; + FloatDenseVector[] embeddings; + + /** + * Initialize a EmbeddingSpace from a file. + * + * @param inputStream Stream that contains the Embedding Table. + * @return + */ + public static EmbeddingSpace readEmbeddingStream(InputStream inputStream) { + List vectors = new ArrayList<>(); + Map toId = new HashMap<>(); + try (BufferedReader br = new BufferedReader(new InputStreamReader(inputStream))) { + String line; + int counter = 0; + while ((line = br.readLine()) != null) { + String trimedLine = line.trim(); + if (trimedLine.isEmpty()) { + continue; + } + + String[] parts = trimedLine.split("\t"); + if (parts.length != 2) { + continue; + } + String entry = parts[0]; + String[] vecParts = parts[1].split(" "); + float[] vec = new float[vecParts.length]; + for (int i = 0; i < vecParts.length; i++) { + vec[i] = Float.valueOf(vecParts[i]); + } + vectors.add(new FloatDenseVector(vec)); + toId.put(entry, counter); + counter++; + } + } catch (IOException e) { + e.printStackTrace(); + } + return new EmbeddingSpace(toId, vectors); + } + + /** + * Default constructor. + * + * @param entryToId Lookup table for entry to index of the embeddings array. + * @param embeddings Array of Embeddings. + */ + public EmbeddingSpace(Map entryToId, FloatDenseVector[] + embeddings) { + this.entryToId = entryToId; + this.embeddings = embeddings; + } + + public EmbeddingSpace(Map toId, List + vectors) { + this(toId, vectors.toArray(new FloatDenseVector[vectors.size()])); + } + + /** + * Get the embedding of a word or return null. + * + * @param word Query. + * @return Embedding of word query. + */ + public FloatDenseVector getEmbeddingOrNull(String word) { + if (entryToId.containsKey(word)) { + return embeddings[entryToId.get(word)]; + } + return null; + } + + public FloatDenseVector getEmbeddingOrNull(Sentence sentence) { + View tokens = sentence.getView(ViewNames.TOKENS); + List constituents = tokens.getConstituents(); + FloatDenseVector sum = null; + for (Constituent c : constituents) { + String token = c.getSurfaceForm(); + + FloatDenseVector dv = getEmbeddingOrNull(token); + if (dv == null) continue; + if (sum == null) { + sum = new FloatDenseVector(dv); + } else { + sum.iadd(dv); + } + } + + return sum; + } + +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/FloatDenseVector.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/FloatDenseVector.java new file mode 100644 index 000000000..7f6235240 --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/FloatDenseVector.java @@ -0,0 +1,73 @@ +package edu.illinois.cs.cogcomp.finetyper.wsd.math; + +/** + * Created by haowu4 on 1/13/17. + */ +public class FloatDenseVector { + float[] data; + + public FloatDenseVector(int dim) { + this(new float[dim]); + } + + public FloatDenseVector(float[] data) { + this.data = data; + } + + /** + * Copy constructor. + * + * @param other + */ + public FloatDenseVector(FloatDenseVector other) { + float[] k = other.getDataReference(); + this.data = new float[k.length]; + for (int i = 0; i < k.length; i++) { + this.data[i] = k[i]; + } + } + + /** + * Return the reference of the internal float array. + * + * @return reference of its data. + */ + public float[] getDataReference() { + return data; + } + + /** + * Inplace add another dense vector. + * + * @param v vector to add. + */ + public void iadd(FloatDenseVector v) { + float[] dv = v.getDataReference(); + for (int i = 0; i < dv.length; i++) { + this.data[i] += dv[i]; + } + } + + /** + * Inplace divide by a constant scalar. + * + * @param v constant to divided by. + */ + public void idivide(float v) { + for (int i = 0; i < data.length; i++) { + this.data[i] /= v; + } + } + + /** + * Inplace subtract another vector. + * + * @param v constant to subtract. + */ + public void isub(FloatDenseVector v) { + float[] dv = v.getDataReference(); + for (int i = 0; i < dv.length; i++) { + this.data[i] -= dv[i]; + } + } +} diff --git a/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/Similarity.java b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/Similarity.java new file mode 100644 index 000000000..bb3872c5c --- /dev/null +++ b/finetyper/src/main/java/edu/illinois/cs/cogcomp/finetyper/wsd/math/Similarity.java @@ -0,0 +1,56 @@ +package edu.illinois.cs.cogcomp.finetyper.wsd.math; + +/** + * Created by haowu4 on 1/13/17. + */ +public class Similarity { + /** + * Compute cosine similarity of two vectors. + * You need to provide a precomputed l2norm for both vector. + * This function is useful when you want to avoid re-computation of the l2norm of one vector. + * + * @param v1 First vector. + * @param v2 Second vector. + * @param v1n L2 Norm of first vector. + * @param v2n L2 Norm of second vector. + * @return Cosine similarity of v1 and v2. + */ + public static double cosine(FloatDenseVector v1, FloatDenseVector v2, double v1n, + double v2n) { + float[] v1_ = v1.getDataReference(); + float[] v2_ = v2.getDataReference(); + double r = 0; + for (int i = 0; i < v1_.length; i++) { + r += (v1_[i] * v2_[i]); + } + return r / (v1n * v2n); + + } + + /** + * Compute cosine similarity of two vectors. + * + * @param v1 First vector. + * @param v2 Second vector. + * @return Cosine similarity of v1 and v2. + */ + public static double cosine(FloatDenseVector v1, FloatDenseVector v2) { + return cosine(v1, v2, l2norm(v1), l2norm(v2)); + } + + /** + * Compute L2 l2norm of the vector. + * + * @param v1 Vector to compute l2norm. + * @return L2 l2norm of the vector. + */ + public static double l2norm(FloatDenseVector v1) { + float[] v1_ = v1.getDataReference(); + double r = 0; + for (int i = 0; i < v1_.length; i++) { + r += (v1_[i] * v1_[i]); + } + return Math.sqrt(r); + + } +} diff --git a/finetyper/src/main/resources/finer_resource/figer.xiang.label b/finetyper/src/main/resources/finer_resource/figer.xiang.label new file mode 100644 index 000000000..3da329893 --- /dev/null +++ b/finetyper/src/main/resources/finer_resource/figer.xiang.label @@ -0,0 +1,10442 @@ +A O +handful O +of O +professors O +in O +the O +UW B-/organization,/organization/educational_institution +Department B-/education/department,/organization,/education +of I-/education/department,/organization,/education +Chemistry I-/education/department,/organization,/education +are O +being O +recognized O +by O +the O +American B-/organization +Association I-/organization +for I-/organization +the I-/organization +Advancement I-/organization +of I-/organization +Science I-/organization +( O +AAAS B-/organization +) O +for O +their O +efforts O +and O +contributions O +to O +the O +scientific O +community O +. 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O +” O + +Balth B-/person +sometimes O +uses O +digital O +video O +to O +capture O +motifs O +and O +a O +videograb O +to O +capture O +moving O +light O +. O + +He O +then O +prints O +the O +work O +on O +watercolor O +paper O +, O +creating O +a O +mixture O +of O +both O +contemporary O +art O +, O +photos O +, O +and O +an O +older O +form O +of O +art O +, O +watercolor O +. O + +He O +often O +plays O +with O +light O +and O +perception O +. O + +In O +one O +of O +his O +“ O +Videowatercolor B-/art +” O +pieces O +, O +“ O +Moving B-/art +II I-/art +, O +” O +Balth B-/person +simply O +rotates O +an O +image O +of O +water O +, O +juxtaposing O +it O +with O +the O +original O +photo O +and O +making O +it O +unrecognizable O +. O + +“ O +Our O +eyes O +are O +so O +conditioned O +to O +see O +a O +certain O +way O +, O +” O +Wieczorek B-/person +said O +. O + +“ O +You O +do O +not O +have O +to O +have O +any O +foreknowledge O +of O +art O +to O +appreciate O +[ O +the O +piece O +] O +. O +” O + +Wieczorek B-/person +said O +Balth B-/person +also O +plays O +with O +the O +“ O +liminal O +conditions O +of O +perception O +. O +” O + +In O +Balth B-/person +’s O +work O +“ O +Artwork B-/art +without I-/art +the I-/art +Tulipman I-/art +, O +” O +Balth B-/person +took O +a O +Polaroid O +of O +a O +building O +and O +scratched O +the O +photo O +with O +his O +nails O +before O +removing O +the O +film O +. O + +This O +made O +orange O +colors O +look O +like O +they O +radiated O +off O +the O +building O +, O +as O +if O +it O +were O +on O +fire O +. O + +Wieczorek B-/person +calls O +it O +“ O +chemical O +light O +, O +” O +saying O +that O +Balth B-/person +is O +“ O +casting O +light O +into O +the O +dark O +. O +” O + +“ O +There O +was O +never O +any O +light O +in O +the O +photograph O +, O +but O +we O +think O +we O +see O +light O +, O +” O +Wieczorek B-/person +said O +. O + +In O +an O +interview O +with O +The B-/news_agency,/organization,/written_work,/organization/company +Seattle I-/news_agency,/organization,/written_work,/organization/company +Times I-/news_agency,/organization,/written_work,/organization/company +, O +Balth B-/person +said O +his O +intention O +in O +his O +art O +is O +“ O +to O +come O +to O +the O +heart O +of O +seeing O +, O +the O +core O +of O +perception O +. O +” O + +Speaking O +to O +the O +artist O +about O +his O +pieces O +, O +Wieczorek B-/person +said O +, O +helped O +him O +understand O +Balth B-/person +’s O +intentions O +behind O +the O +work O +. O + +However O +, O +Wieczorek B-/person +said O +the O +curator O +does O +n’t O +need O +to O +know O +the O +artist O +personally O +to O +help O +create O +an O +exhibition O +of O +his O +or O +her O +work O +. O + +“ O +I O +do O +not O +think O +it O +’s O +necessary O +to O +know O +the O +artist O +intimately O +, O +but O +I O +think O +it O +helps O +, O +” O +he O +said O +. O + +“ O +You O +kind O +of O +understand O +more O +what O +the O +artist O +is O +doing O +. O + +I O +think O +it O +makes O +a O +difference O +. O +” O + +In O +the O +end O +, O +Wieczorek B-/person +said O +knowing O +the O +artist O +is O +not O +what O +makes O +the O +work O +powerful O +. O + +Rather O +, O +it O +’s O +how O +the O +pieces O +themselves O +speak O +to O +the O +audience O +. O + +“ O +The O +work O +stands O +on O +its O +own O +, O +” O +he O +said O +. O + +“ O +It O +should O +, O +ideally O +, O +speak O +for O +itself O +. O +” O + +Although O +the O +bill O +concerning O +it O +has O +been O +tabled O +by O +the O +ASUW B-/organization +Board I-/organization +of I-/organization +Directors I-/organization +, O +many O +students O +still O +feel O +a O +new O +commission O +representing O +South B-/location,/people/ethnicity,/people +Asian I-/location,/people/ethnicity,/people +student O +groups O +would O +be O +beneficial O +to O +the O +community O +. O + +The O +proposed O +commission O +would O +reduce O +the O +number O +of O +constituent O +organizations O +under O +the O +Asian B-/organization +Student I-/organization +Commission I-/organization +( O +ASC B-/organization +) O +. O + +Currently O +encompassing O +28 O +RSOs O +, O +the O +ASC B-/organization +represents O +the O +widest O +community O +under O +the O +ASUW B-/organization +Joint I-/organization +Commission I-/organization +Committee I-/organization +. O + +Divya B-/person +Ramachandra I-/person +, O +secretary O +of O +the O +Indian B-/organization +Student I-/organization +Association I-/organization +( O +ISA B-/organization +) O +, O +said O +that O +the O +broad O +community O +covered O +in O +ASC B-/organization +makes O +it O +difficult O +for O +some O +constituents O +to O +feel O +connected O +to O +others O +. O + +“ O +The O +South B-/location +Asian I-/location +student O +groups O +and O +cultures O +are O +very O +different O +than O +the O +East B-/location +Asian I-/location +student O +groups O +and O +cultures O +, O +and O +I O +know O +people O +want O +a O +separate O +commission O +to O +better O +fit O +the O +needs O +of O +these O +groups O +, O +” O +Ramachandra B-/person +said O +. O + +“ O +It O +’s O +hard O +to O +get O +our O +constituents O +to O +go O +to O +other O +ASC B-/organization +events O +because O +they O +’re O +not O +interested O +or O +they O +do O +n’t O +have O +time O +. O + +They O +want O +to O +get O +to O +know O +their O +own O +cultures O +more O +than O +they O +have O +time O +to O +get O +to O +know O +other O +cultures O +. O +” O + +Despite O +these O +views O +, O +Ramachandra B-/person +said O +she O +personally O +has O +reservations O +about O +the O +proposed O +commission O +. O + +“ O +I O +guess O +I O +just O +see O +diversity O +not O +as O +segregating O +but O +more O +as O +bringing O +together O +other O +cultures O +, O +” O +Ramashandra B-/person +said O +. O + +“ O +If O +you O +narrow O +the O +culture O +even O +more O +to O +one O +student O +commission O +, O +then O +how O +are O +you O +supposed O +to O +get O +to O +know O +other O +RSOs O +around O +campus O +? O +” O + +The O +ASUW B-/organization +bill O +regarding O +a O +proposed O +South B-/location +Asian I-/location +commission O +created O +a O +task O +force O +to O +determine O +if O +a O +new O +commission O +was O +truly O +desired O +in O +the O +community O +. O + +Jonathan B-/person +Winn I-/person +, O +ASUW B-/organization +director O +of O +diversity O +efforts O +, O +said O +he O +wrote O +the O +bill O +after O +hearing O +discussion O +about O +such O +a O +commission O +during O +recent O +years O +. O + +“ O +I O +wanted O +to O +explore O +the O +option O +because O +there O +has O +always O +been O +talk O +about O +it O +, O +but O +there O +has O +never O +been O +a O +task O +force O +to O +officially O +see O +if O +that O +was O +something O +that O +the O +ASUW B-/organization +would O +take O +on O +, O +” O +Winn B-/person +said O +. O + +Winn B-/person +said O +he O +was O +not O +upset O +the O +bill O +was O +being O +tabled O +because O +it O +gives O +the O +community O +time O +to O +review O +the O +idea O +of O +forming O +a O +new O +commission O +before O +making O +a O +decision O +. O + +ASC B-/organization +Director B-/person +Melvin I-/person +Taing I-/person +said O +that O +because O +the O +commission O +is O +still O +in O +the O +exploratory O +stages O +, O +he O +has O +been O +trying O +to O +approach O +the O +subject O +objectively O +and O +has O +continued O +to O +ask O +his O +constituents O +’ O +opinions O +. O + +A O +forum O +will O +be O +held O +Jan. B-/time +18 I-/time +for O +students O +to O +discuss O +the O +matter O +. O + +Discussion O +between O +the O +ASC B-/organization +constituents O +has O +been O +a O +struggle O +with O +such O +a O +large O +community O +, O +Taing B-/person +said O +. O + +According O +to O +statistics O +released O +by O +the O +UW B-/organization +Office I-/organization +of I-/organization +the I-/organization +Registrar I-/organization +last O +quarter O +, O +Asian B-/people/ethnicity,/people +and O +Asian-American B-/people/ethnicity,/people +students O +currently O +make O +up O +22.2 O +percent O +of O +the O +UW O +population O +. O + +Representing O +nearly O +a O +quarter O +of O +the O +current O +student O +body O +, O +ASC B-/organization +has O +been O +overflowing O +with O +constituents O +. O + +This O +would O +not O +be O +the O +first O +time O +the O +ASC B-/organization +community O +has O +been O +divided O +. O + +In O +2000 O +, O +student O +groups O +split O +from O +ASC B-/organization +in O +order O +to O +form O +the O +Pacific B-/organization +Islander I-/organization +Student I-/organization +Commission I-/organization +. O + +Taing B-/person +said O +that O +some O +students O +feel O +as O +though O +smaller O +commissions O +could O +allow O +for O +better O +communication O +between O +RSOs O +. O + +“ O +All O +the O +South O +Asian O +groups O +are O +pretty O +close O +with O +each O +other O +and O +communicate O +with O +each O +other O +fairly O +often O +, O +but O +that O +is O +not O +being O +done O +at O +all O +with O +ASC B-/organization +, O +” O +Taing B-/person +said O +. O + +“ O +Some O +people O +have O +felt O +that O +South B-/location,/people/ethnicity,/people +Asian I-/location,/people/ethnicity,/people +people O +have O +been O +left O +out O +of O +the O +Asian B-/organization +Student I-/organization +Commission I-/organization +and O +that O +they O +do O +n’t O +feel O +like O +they O +are O +being O +represented O +well O +in O +the O +ASC B-/organization +. O +” O + +Taing B-/person +said O +the O +new O +commission O +would O +also O +shrink O +his O +workload O +and O +increase O +the O +funding O +that O +reaches O +his O +constituents O +. O + +“ O +A O +lot O +of O +the O +work O +that O +I O +have O +to O +do O +every O +day O +is O +busy-work O +trying O +to O +get O +all O +of O +the O +28 O +groups O +on O +the O +same O +page O +, O +” O +Taing B-/person +said O +. O + +“ O +The O +commission O +would O +actually O +alleviate O +a O +lot O +of O +the O +workload O +and O +resources O +. O +” O + +Ramachandra B-/person +said O +she O +believes O +these O +resources O +would O +help O +fund O +more O +constituents O +’ O +events O +, O +such O +as O +Bhangra B-/event +Bash I-/event +. O + +“ O +Bhangra B-/event +Bash I-/event +used O +to O +be O +our O +biggest O +event O +because O +we O +would O +fly O +in O +people O +from O +all O +of O +the O +country O +, O +but O +as O +one O +RSO O +, O +it O +was O +way O +too O +hard O +for O +us O +to O +put O +it O +on O +as O +a O +group O +, O +” O +Ramachandra B-/person +said O +. O + +“ O +Having O +the O +South B-/location,/people/ethnicity,/people +Asian I-/location,/people/ethnicity,/people +student O +commission O +would O +give O +more O +opportunities O +for O +some O +of O +the O +events O +that O +we O +have O +had O +in O +the O +past O +but O +are O +not O +able O +to O +do O +now O +because O +we O +do O +n’t O +have O +enough O +people O +or O +enough O +time O +or O +money O +. O +” O + +A O +statewide O +contest O +titled O +“ O +Be O +the O +Change O +” O +wants O +UW O +students O +to O +try O +their O +hand O +at O +solving O +any O +one O +of O +the O +world O +’s O +most O +pressing O +health O +issues O +. O + +“ O +Seattle B-/location/city,/location +is O +one O +of O +the O +capitals O +of O +global O +health O +, O +and O +yet O +there O +are O +n’t O +enough O +young O +people O +aware O +of O +the O +opportunities O +to O +do O +something O +positive O +with O +their O +lives O +and O +to O +actually O +have O +a O +career O +working O +in O +global O +health O +, O +” O +said O +William B-/person +Heisel I-/person +, O +a O +representative O +at O +the O +Institute B-/organization +for I-/organization +Health I-/organization +Metrics I-/organization +and I-/organization +Evaluation I-/organization +( O +IHME B-/organization +) O +. O + +UW O +staff O +from O +the O +Foster B-/organization,/organization/educational_institution +School I-/organization,/organization/educational_institution +of I-/organization,/organization/educational_institution +Business I-/organization,/organization/educational_institution +and O +IHME B-/organization +helped O +create O +the O +contest O +, O +which O +is O +sponsored O +by O +the O +Global B-/organization +Health I-/organization +Nexus I-/organization +— O +an O +initiative O +of O +the O +Washington B-/organization +Global I-/organization +Health I-/organization +Alliance I-/organization +that O +works O +to O +raise O +statewide O +awareness O +of O +global O +health O +. O + +“ O +Be O +the O +Change O +” O +committee O +members O +used O +the O +Foster B-/organization,/organization/educational_institution +School I-/organization,/organization/educational_institution +of I-/organization,/organization/educational_institution +Business I-/organization,/organization/educational_institution +’ O +annual O +Global B-/event +Social I-/event +Entrepreneurship I-/event +Competition I-/event +( O +GSEC O +) O +as O +a O +model O +to O +design O +their O +competition O +. O + +Similar O +to O +“ O +Be O +the O +Change O +, O +” O +students O +work O +to O +reduce O +poverty O +in O +a O +developing O +economy O +, O +but O +do O +so O +by O +designing O +and O +creating O +a O +global O +business O +. O + +“ O +The O +goal O +with O +Foster O +’s O +[ O +contest O +] O +is O +to O +generate O +innovative O +ideas O +and O +kind O +of O +push O +the O +envelope O +from O +a O +business O +perspective O +, O +and O +we O +’re O +hoping O +to O +do O +the O +same O +thing O +from O +a O +global O +health O +perspective O +, O +” O +Heisel B-/person +said O +. O + +“ O +Be O +the O +Change O +” O +will O +accept O +applications O +from O +any O +high O +school O +, O +community O +college O +, O +or O +university O +students O +through O +Jan. O +13 O +. O + +Finalists O +are O +chosen O +by O +a O +panel O +of O +judges O +made O +up O +of O +local O +business O +leaders O +and O +educators O +and O +will O +receive O +revisions O +to O +their O +solution O +in O +March B-/time +. O + +Part O +of O +the O +judging O +criteria O +will O +include O +whether O +or O +not O +a O +solution O +can O +be O +easily O +applied O +. O + +The O +winner O +will O +be O +announced O +next O +summer O +, O +but O +even O +students O +who O +do O +n’t O +win O +may O +still O +have O +the O +opportunity O +to O +discuss O +their O +solution O +with O +someone O +from O +a O +relevant O +organization O +— O +such O +as O +the O +Bill B-/organization +& I-/organization +Melinda I-/organization +Gates I-/organization +Foundation I-/organization +; O +the O +international O +, O +nonprofit O +organization O +PATH O +; O +the O +Seattle B-/location,/building/hospital,/building +Children I-/location,/building/hospital,/building +’s I-/location,/building/hospital,/building +Hospital I-/location,/building/hospital,/building +, O +and O +IHME B-/organization +, O +a O +UW O +affiliate O +. O + +“ O +There O +’s O +the O +chance O +not O +just O +to O +win O +, O +but O +the O +idea O +that O +students O +are O +able O +to O +engage O +with O +people O +in O +global O +health O +who O +might O +be O +beneficial O +to O +their O +career O +, O +” O +Heisel B-/person +said O +. O + +“ O +This O +is O +a O +way O +for O +young O +people O +to O +get O +their O +foot O +in O +the O +door O +. O +” O + +To O +enter O +, O +students O +must O +choose O +an O +issue O +and O +submit O +a O +two-page O +proposal O +or O +video O +that O +thoroughly O +explains O +their O +solution O +. O + +Common O +issues O +include O +things O +like O +developing O +a O +malaria O +education O +curriculum O +or O +improving O +access O +to O +clean O +water O +. O + +The O +latter O +topic O +is O +what O +freshman O +Jamie B-/person +Choe I-/person +chose O +. O + +She O +entered O +the O +competition O +with O +a O +team O +of O +four O +bioengineering O +classmates O +after O +hearing O +of O +it O +through O +an O +email O +. O + +Her O +team O +’s O +proposal O +describes O +a O +water-filtration O +device O +, O +consisting O +of O +a O +microfiber O +bag O +that O +separates O +clean O +water O +from O +dirty O +water O +. O + +Choe B-/person +’s O +team O +, O +dubbed O +“ O +Ali B-/organization +Baba I-/organization +, O +” O +hopes O +that O +this O +basic O +contraption O +could O +be O +used O +in O +countries O +such O +as O +India B-/location/country,/location +, O +which O +is O +currently O +plagued O +with O +a O +water O +crisis O +. O + +“ O +It O +sounds O +like O +a O +simple O +solution O +, O +but O +it O +can O +save O +lives O +in O +other O +places O +, O +” O +Choe B-/person +said O +. O + +UW O +faculty O +member O +Alyssa B-/person +Taylor I-/person +instructed O +the O +students O +from O +“ O +Ali O +Baba O +” O +in O +a O +bioengineering O +class O +last O +quarter O +. O + +Taylor B-/person +said O +the O +contest O +is O +a O +way O +for O +students O +to O +easily O +engage O +with O +important O +global O +issues O +, O +even O +when O +lacking O +technical O +knowledge O +and O +experience O +that O +comes O +with O +age O +. O + +“ O +With O +global-health O +problems O +, O +a O +lot O +of O +the O +solutions O +are O +pretty O +simple O +, O +” O +she O +said O +. O + +“ O +In O +fact O +, O +sometimes O +it O +’s O +the O +simple O +solutions O +that O +work O +best O +. O + +Students O +can O +really O +get O +immersed O +in O +this O +— O +they O +feel O +like O +they O +can O +actually O +make O +a O +difference O +in O +this O +area O +, O +and O +they O +can O +actually O +improve O +people O +’s O +lives O +. O +” O + +The O +emotion O +in O +the O +room O +was O +palpable O +when O +state O +Adirondack B-/organization,/government_agency +Park I-/organization,/government_agency +Agency I-/organization,/government_agency +commissioners O +approved O +a O +permit O +for O +the O +Adirondack B-/building,/building/hotel +Club I-/building,/building/hotel +and I-/building,/building/hotel +Resort I-/building,/building/hotel +Friday O +morning O +. O + +After O +Executive O +Director O +Terry B-/person +Martino I-/person +announced O +the O +final O +vote O +count O +- O +10 O +to O +1 O +- O +a O +round O +of O +applause O +erupted O +from O +the O +many O +Tupper B-/person +Lakers I-/person +and O +local O +government O +representatives O +packed O +into O +the O +APA B-/organization +'s O +board O +room O +. O + +As O +people O +started O +to O +make O +statements O +after O +the O +decision O +, O +there O +were O +also O +more O +than O +a O +few O +happy O +tears O +. 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location.city +0 Georgia State Route 1 transportation.road +3 GmbH 0 organization.company +2 Men's Basketball 0 organization.sports_team +4 Summer Olympics 3 event event.sports_event +1 Mic River 0 location.body_of_water +1 Institute of 1 organization.educational_institution +1 Party of 3 government.political_party +1 Wisconsin Volunteer 2 military +0 Tennessee State Route 1 transportation.road +1 States District Court for 5 government.government government_agency +1 national futsal 1 organization.sports_team +2 Men's Football 0 organization.sports_team +1 Air Expeditionary 1 military +0 European route 1 transportation.road +2 High School, main 1 organization.educational_institution +1 State University 3 organization.sports_team +4 hockey team 0 organization.sports_team +2 election, 2009 0 event.election +1 national football 1 organization.sports_team +4 Inc. 2 organization.company +1 Puerto Rico 0 location.county +1 ship of the 1 product.ship +1 Sheriff of 1 title +0 Journal of 2 written_work +4 and Technology 0 organization.educational_institution +2 LLC 2 organization.company +2 at the 6 event.sports_event +1 Regiment Kentucky 2 military +1 African Class 2 train +1 Fed Cup 1 organization.sports_team +1 Air Defense 1 military +2 University, main 1 organization.educational_institution organization +1 High School, main 1 organization.educational_institution +3 Film Festival 0 event +0 Japan National Route 1 transportation.road +3 School of 3 organization.educational_institution diff --git a/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/FinerResourceUpload.java b/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/FinerResourceUpload.java new file mode 100644 index 000000000..bb970f18e --- /dev/null +++ b/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/FinerResourceUpload.java @@ -0,0 +1,37 @@ +package edu.illinois.cs.cogcomp.finetyper; + +import io.minio.errors.InvalidEndpointException; +import io.minio.errors.InvalidPortException; +import org.cogcomp.Datastore; +import org.cogcomp.DatastoreException; + +import java.io.File; + +import static org.junit.Assert.*; + +/** + * Created by haowu4 on 2/7/18. + */ +public class FinerResourceUpload { + public static void main(String[] args) throws InvalidPortException, InvalidEndpointException, DatastoreException { + String accessKey = "7BDP8NOBCLRHDENUDZ1H"; + String secretKey = "zkTS6t8OsmXuVHqClpDMlwaG6wKvLy/uKz3aDUbL"; + String serverAddress = "http://127.0.0.1:9000"; + + String baseFolder = "/data/fine-tpying-package"; + + Datastore datastore = new Datastore(serverAddress, accessKey, secretKey); + String[] toupload = new String[]{ + FinerResource.WORD_EMBEDDING_TAR_GZ, + FinerResource.SENSE_EMBEDDING_TAR_GZ, + FinerResource.KB_BIAS_RESOURCE_TAR_GZ, + FinerResource.WORD_POS_TO_SENSE_TAR_GZ, + FinerResource.SYNSET2TYPE_TAR_GZ + }; + + for (String file : toupload) { + datastore.publishFile(FinerResource.FINER_RESOURCE_GROUP_ID, file, 1.0, new File(baseFolder, file).getAbsolutePath()); + } + + } +} \ No newline at end of file diff --git a/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/TestFiger.java b/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/TestFiger.java new file mode 100644 index 000000000..d3c91e05c --- /dev/null +++ b/finetyper/src/test/java/edu/illinois/cs/cogcomp/finetyper/TestFiger.java @@ -0,0 +1,113 @@ +package edu.illinois.cs.cogcomp.finetyper; + +import edu.illinois.cs.cogcomp.annotation.AnnotatorException; +import edu.illinois.cs.cogcomp.annotation.BasicAnnotatorService; +import edu.illinois.cs.cogcomp.annotation.BasicTextAnnotationBuilder; +import edu.illinois.cs.cogcomp.core.datastructures.ViewNames; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.Constituent; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.TextAnnotation; +import edu.illinois.cs.cogcomp.core.datastructures.textannotation.View; +import edu.illinois.cs.cogcomp.core.utilities.configuration.ResourceManager; +import edu.illinois.cs.cogcomp.finetyper.finer.FinerAnnotator; +import edu.illinois.cs.cogcomp.finetyper.finer.FinerTyperFactory; +import edu.illinois.cs.cogcomp.finetyper.finer.datastructure.types.TypeSystem; +import edu.illinois.cs.cogcomp.finetyper.wsd.WordSenseAnnotator; +import edu.illinois.cs.cogcomp.finetyper.wsd.math.FloatDenseVector; +import edu.illinois.cs.cogcomp.pipeline.main.PipelineFactory; +import org.apache.commons.io.FileUtils; +import org.apache.commons.io.LineIterator; +import org.cogcomp.DatastoreException; + +import java.io.*; +import java.util.ArrayList; +import java.util.List; +import java.util.Properties; + + +/** + * Created by haowu4 on 1/31/17. + */ +public class TestFiger { + + public static void printColumn(TextAnnotation ta) { + View view = ta.getView(ViewNames.FINE_NER_TYPE); + String[] tokens = ta.getTokens(); + String[] bios = new String[tokens.length]; + String[] types = new String[tokens.length]; + + for (int i = 0; i < tokens.length; i++) { + bios[i] = "O"; + types[i] = null; + } + for (Constituent c : view.getConstituents()) { + for (int j = c.getStartSpan(); j < c.getEndSpan(); j++) { + bios[j] = "I"; + types[j] = String.join(",", c.getLabelsToScores().keySet()); + } + + bios[c.getStartSpan()] = "B"; + } + + for (int i = 0; i < tokens.length; i++) { + String label = "O"; + if (null != types[i]) { + label = String.format("%s-%s", bios[i], types[i]); + } + System.out.println(String.format("%s\t%s", tokens[i], label)); + } + } + + public static List loadFigers() throws + IOException, AnnotatorException { + List sentences = new ArrayList<>(); + List tas = new ArrayList<>(); + + try (BufferedReader br = new BufferedReader( + new InputStreamReader( + ClassLoader.getSystemResourceAsStream("finer_resource/figer.xiang.label")))) { + String line; + BasicAnnotatorService bas = PipelineFactory.buildPipeline(ViewNames.POS, ViewNames.NER_ONTONOTES); + while ((line = br.readLine()) != null) { + line = line.trim(); + if (line.isEmpty()) { + List doc = new ArrayList<>(); + String[] x = new String[sentences.size()]; + for (int i = 0; i < sentences.size(); i++) { + x[i] = sentences.get(i); + } + doc.add(x); + TextAnnotation ta = BasicTextAnnotationBuilder + .createTextAnnotationFromTokens(doc); + ta = bas.annotateTextAnnotation(ta, false); + ta.getView(ViewNames.POS); + ta.getView(ViewNames.NER_ONTONOTES); + tas.add(ta); + sentences = new ArrayList<>(); + } else { + String w = line.split("\t")[0]; + sentences.add(w); + } + } + } catch (IOException e) { + e.printStackTrace(); + } + + + return tas; + } + + public static void main(String[] args) throws IOException, + AnnotatorException, DatastoreException { + List inputs = loadFigers(); + WordSenseAnnotator wsd = new WordSenseAnnotator(ViewNames.FINE_NER_TYPE_WSD, new ResourceManager(new Properties())); + FinerTyperFactory factory = new FinerTyperFactory(); + FinerAnnotator finer = factory.getAnnotator(); + for (TextAnnotation ta : inputs) { + wsd.addView(ta); + finer.addView(ta); + printColumn(ta); + System.out.println(); + } + + } +} diff --git a/pom.xml b/pom.xml index 27fe4e73e..6e33211d0 100644 --- a/pom.xml +++ b/pom.xml @@ -33,6 +33,7 @@ verbsense pipeline dataless-classifier + finetyper external/external-commons external/clausie