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@Computational-Plant-Science

Computational Plant Science Lab

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  1. 3D_Sorghum_phenotyping_pipeline 3D_Sorghum_phenotyping_pipeline Public

    Pipeline: Traits computation from 3D Sorghum root models

    Python

  2. 3D_model_traits_demo 3D_model_traits_demo Public

    Computation of root phenes from 3D point clouds.

    Python 6 1

  3. AI_U2net_color_clustering AI_U2net_color_clustering Public

    A machine learning model U2net and opencv based color clsutering method hat performs object segmentation in a single shot

    Python

  4. 3d_sorghum_segmentation 3d_sorghum_segmentation Public

    A machine learning model U2net and opencv based color clustering method that performs object segmentation in a single shot

    Python

  5. 3D_colmap 3D_colmap Public

    General-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline using COLMAP

    Python

  6. ml_smart_docker ml_smart_docker Public

    Docker container for smart

    Python

Repositories

Showing 10 of 42 repositories
  • ml_smart_release Public

    SMART software release version

    Computational-Plant-Science/ml_smart_release’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 14, 2025
  • ml_smart_docker Public

    Docker container for smart

    Computational-Plant-Science/ml_smart_docker’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Aug 3, 2025
  • DIRTNet-CornRoot Public

    DIRTNet: A Hybrid Deep Learning Framework for Non-Destructive Root Phenotyping Using Fiber Bragg Grating (FBG) Sensor Data

    Computational-Plant-Science/DIRTNet-CornRoot’s past year of commit activity
    Python 0 0 0 0 Updated Jul 22, 2025
  • Computational-Plant-Science/3D_model_traits_release’s past year of commit activity
    Python 0 BSD-2-Clause 0 0 0 Updated Jul 16, 2025
  • Computational-Plant-Science/3D_beanroot_phenotyping_pipeline’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jul 2, 2025
  • cactice Public

    computing agricultural crop lattices

    Computational-Plant-Science/cactice’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated May 23, 2025
  • pycyapi Public

    unofficial Python CyVerse API client

    Computational-Plant-Science/pycyapi’s past year of commit activity
    Python 4 BSD-3-Clause 2 2 1 Updated May 20, 2025
  • plantit Public
    Computational-Plant-Science/plantit’s past year of commit activity
    Vue 11 BSD-3-Clause 5 48 (2 issues need help) 13 Updated May 20, 2025
  • DIRT-Pop.v1 Public
    Computational-Plant-Science/DIRT-Pop.v1’s past year of commit activity
    R 0 0 0 0 Updated May 20, 2025
  • Computational-Plant-Science/sorghum_results_analysis’s past year of commit activity
    Python 0 0 0 0 Updated May 16, 2025

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