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Description
for f in modules/nf-core/*/main.nf modules/nf-core/*/*/main.nf modules/local/*.nf; do
[ -f "$f" ] || continue
name=$(echo "$f" | sed 's|modules/||' | sed 's|/main.nf||' | sed 's|.nf$||')
if grep -q "topic: versions" "$f"; then
echo "- [x] \`${name}\`"
else
echo "- [ ] \`${name}\`"
fi
done 2>/dev/null
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nf-core/eggnogmapper -
nf-core/gffread -
nf-core/gunzip -
nf-core/ncbigenomedownload -
nf-core/orthofinder -
nf-core/quast -
nf-core/agat/convertspgxf2gxf -
nf-core/agat/spkeeplongestisoform -
nf-core/agat/spstatistics -
nf-core/busco/busco -
nf-core/custom/dumpsoftwareversions -
local/cafe -
local/cafe_go -
local/cafe_plot -
local/cafe_with_retry -
local/chromo_go -
local/eggnog_download -
local/eggnog_to_go -
local/eggnog_to_og_go -
local/filter_fasta -
local/getdata -
local/go_assign -
local/go_expansion -
local/rescale_tree
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