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Merge pull request #8 from GeoStat-Framework/develop
Release v1
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‎.coveragerc‎

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[run]
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source = welltestpy
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omit = *docs*, *examples*, *tests*
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[report]
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exclude_lines =
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pragma: no cover
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if __name__ == '__main__':
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def __repr__
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def __str__

‎.gitignore‎

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*.pyc
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*.orig
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*~
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.spyproject/
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# Byte-compiled / optimized / DLL files
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__pycache__/
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docs/build/
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#_build
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#_static
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#_templates
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#docs/
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*.py[cod]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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.Python
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env/
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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.hypothesis/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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docs/output.txt
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# PyBuilder
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# pyenv
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.python-version
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# celery beat schedule file
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celerybeat-schedule
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# SageMath parsed files
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*.sage.py
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# dotenv
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.env
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# virtualenv
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.venv
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venv/
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ENV/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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tags
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/test_*
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# own stuff
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info/
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# Cython generated C code
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*.c
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*.cpp
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# generated docs
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docs/source/examples/
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docs/source/generated/
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examples/Cmp_UFZ-campaign.cmp
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*.DS_Store
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*.zip
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*.vtu
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*.vtr

‎.travis.yml‎

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language: python
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python: 3.8
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matrix:
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include:
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# use macOS for py2 since building pandas wheels takes ages on linux
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# and matplotlib is not installing on linux
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- name: "MacOS py27"
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os: osx
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language: generic
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env:
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- PIP=pip2
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- CIBW_BUILD="cp27-*"
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- COVER="off"
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# use macOS for py3 since building matplotlib is not working on linux
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- name: "MacOS py36"
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os: osx
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language: generic
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env:
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- PIP=pip2
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- CIBW_BUILD="cp36-*"
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- COVER="on"
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# setuptools-scm needs all tags in order to obtain a proper version
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git:
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depth: false
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env:
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global:
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# Note: TWINE_PASSWORD is set in Travis settings
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- TWINE_USERNAME=geostatframework
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script:
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# create wheels
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- sudo $PIP install cibuildwheel==0.10.1
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- cibuildwheel --output-dir wheelhouse
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# create source dist for pypi and create coverage (only once for linux py3.6)
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- |
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if [[ $COVER == "on" ]]; then
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rm -rf dist
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python setup.py sdist
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fi
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after_success:
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# pypi upload (test allways and official on TAG)
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- python -m pip install twine
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- python -m twine upload --skip-existing --repository-url https://test.pypi.org/legacy/ wheelhouse/*.whl
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- python -m twine upload --skip-existing --repository-url https://test.pypi.org/legacy/ dist/*.tar.gz
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- |
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if [[ $TRAVIS_TAG ]]; then
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python -m twine upload --skip-existing wheelhouse/*.whl
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python -m twine upload --skip-existing dist/*.tar.gz
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fi
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- CIBW_BUILD="cp35-* cp36-* cp37-* cp38-*"
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- CIBW_SKIP="*_i686" # skip linux 32bit for matplotlib
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# update setuptools to latest version
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- CIBW_BEFORE_BUILD="pip install -U setuptools"
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# testing with cibuildwheel
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- CIBW_TEST_REQUIRES=pytest
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- CIBW_TEST_COMMAND="pytest -v {project}/tests"
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notifications:
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email:
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recipients:
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- [email protected]
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before_install:
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- |
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if [[ "$TRAVIS_OS_NAME" = windows ]]; then
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choco install python --version 3.8.0
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export PATH="/c/Python38:/c/Python38/Scripts:$PATH"
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# make sure it's on PATH as 'python3'
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ln -s /c/Python38/python.exe /c/Python38/python3.exe
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fi
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install:
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- python3 -m pip install cibuildwheel==1.3.0
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script:
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- python3 -m cibuildwheel --output-dir tmp_dist
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stages:
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- test
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- coverage
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- name: deploy
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if: (NOT type IN (pull_request)) AND (repo = GeoStat-Framework/welltestpy)
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jobs:
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include:
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- stage: test
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name: Test on Linux
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services: docker
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- stage: test
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name: Test on MacOS
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os: osx
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language: generic
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- stage: test
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name: Test on Windows
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os: windows
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language: shell
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- stage: coverage
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name: Coverage on Linux
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services: docker
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install: python3 -m pip install .[test] coveralls
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script:
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- python3 -m pytest --cov welltestpy --cov-report term-missing -v tests/
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- python3 -m coveralls
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# Test Deploy source distribution
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- stage: deploy
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name: Test Deploy
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install: python3 -m pip install -U setuptools wheel twine
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script: python3 setup.py sdist --formats=gztar bdist_wheel
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after_success:
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- python3 -m twine upload --verbose --skip-existing --repository-url https://test.pypi.org/legacy/ dist/*
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# Deploy source distribution
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- stage: deploy
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name: Deploy to PyPI
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if: tag IS present
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install: python3 -m pip install -U setuptools wheel twine
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script: python3 setup.py sdist --formats=gztar bdist_wheel
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after_success: python3 -m twine upload --verbose --skip-existing dist/*

‎.zenodo.json‎

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{
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"license": "MIT",
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"language": "eng",
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"keywords": [
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"Groundwater flow equation",
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"Groundwater",
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"Pumping test",
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"Pump test",
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"Aquifer analysis",
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"Python",
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"GeoStat-Framework"
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],
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"creators": [
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{
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"orcid": "0000-0001-9060-4008",
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"affiliation": "Helmholtz Centre for Environmental Research - UFZ",
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"name": "Sebastian M\u00fcller"
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}
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]
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}

‎CHANGELOG.md‎

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# Changelog
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All notable changes to **welltestpy** will be documented in this file.
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## [1.0.0] - 2020-04-09
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### Enhancements
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- new estimators
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- ExtTheis3D
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- ExtTheis2D
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- Neuman2004
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- Theis
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- ExtThiem3D
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- ExtThiem2D
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- Neuman2004Steady
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- Thiem
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- better plotting
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- unit-tests run with py35-py38 on Linux/Win/Mac
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- coverage calculation
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- sphinx gallery for examples
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- allow style setting in plotting routines
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### Bugfixes
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- estimation results stored as dict (order could alter before)
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### Changes
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- py2 support dropped
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- `Fieldsite.coordinates` now returns a `Variable`; `Fieldsite.pos` as shortcut
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- `Fieldsite.pumpingrate` now returns a `Variable`; `Fieldsite.rate` as shortcut
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- `Fieldsite.auqiferradius` now returns a `Variable`; `Fieldsite.radius` as shortcut
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- `Fieldsite.auqiferdepth` now returns a `Variable`; `Fieldsite.depth` as shortcut
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- `Well.coordinates` now returns a `Variable`; `Well.pos` as shortcut
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- `Well.welldepth` now returns a `Variable`; `Well.depth` as shortcut
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- `Well.wellradius` added and returns the radius `Variable`
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- `Well.aquiferdepth` now returns a `Variable`
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- `Fieldsite.addobservations` renamed to `Fieldsite.add_observations`
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- `Fieldsite.delobservations` renamed to `Fieldsite.del_observations`
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- `Observation` has changed order of inputs/outputs. Now: `observation`, `time`
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## [0.3.2] - 2019-03-08
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### Bugfixes
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- adopt AnaFlow API
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## [0.3.1] - 2019-03-08
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### Bugfixes
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- update travis workflow
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## [0.3.0] - 2019-02-28
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### Enhancements
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- added documentation
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## [0.2.0] - 2018-04-25
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### Enhancements
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- added license
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## [0.1.0] - 2018-04-25
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First alpha release of welltespy.
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[1.0.0]: https://github.com/GeoStat-Framework/welltestpy/compare/v0.3.2...v1.0.0
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[0.3.2]: https://github.com/GeoStat-Framework/welltestpy/compare/v0.3.1...v0.3.2
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[0.3.1]: https://github.com/GeoStat-Framework/welltestpy/compare/v0.3.0...v0.3.1
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[0.3.0]: https://github.com/GeoStat-Framework/welltestpy/compare/v0.2...v0.3.0
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[0.2.0]: https://github.com/GeoStat-Framework/welltestpy/compare/v0.1...v0.2
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[0.1.0]: https://github.com/GeoStat-Framework/welltestpy/releases/tag/v0.1

‎LICENSE‎

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The MIT License (MIT)
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Copyright (c) 2019 Sebastian Mueller
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Copyright (c) 2020 Sebastian Mueller
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal

‎MANIFEST.in‎

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include README.md
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include MANIFEST.in
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include setup.py
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include setup.cfg
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recursive-include welltestpy *.py
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recursive-include tests *.py
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recursive-include docs/source *
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include docs/Makefile docs/requirements.txt
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include docs/Makefile docs/requirements.txt docs/requirements_doc.txt
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include LICENSE
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include requirements.txt
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include requirements_setup.txt
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include requirements_test.txt

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