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feat(gpu): Enhance custom image support and NodeManager stability
This commit introduces a deferred configuration mechanism for custom image builds and improves NodeManager service handling on Rocky Linux. - **Custom Image Deferred Configuration:** - The script now detects if it's running in a custom image build context via `invocation-type=custom-images` metadata. - If so, Hadoop/YARN/Spark configurations are deferred to a first-boot systemd service (`dataproc-gpu-config.service`), which runs `/usr/local/sbin/apply-dataproc-gpu-config.sh`. - `create_deferred_config_files` function now generates this script and service, packaging necessary functions and variables. - In standard init action mode, `apply-dataproc-gpu-config.sh` is run directly at the end of `main`. - **Rocky Linux NodeManager Systemd Unit:** - A native systemd unit for `hadoop-yarn-nodemanager` is now created in `prepare_to_install` for Rocky Linux, replacing any LSB init scripts. - The systemd unit includes `ExecStartPre` steps for PID directory creation and port clearing. - `ExecStart` sources environment files and uses `exec` to run NodeManager. - `ExecStop` uses `pkill` to stop the NodeManager Java process. - `SuccessExitStatus=143` is set to handle SIGTERM exits. - Added `increase_nm_systemd_timeout` to potentially mitigate slow startups. - SELinux context for `/usr/lib/hadoop-yarn/bin/container-executor` is now managed using `semanage` and `restorecon` within `configure_gpu_isolation` to ensure it can be executed by the `yarn` user. - Installed `policycoreutils-python-utils` for `semanage`. - **YARN Configuration:** - Switched to `set_xml_property` for safer XML file updates. - `configure_yarn_resources` now runs on all nodes. - `configure_gpu_isolation` now correctly sets permissions on the `container-executor` binary. - **Single-Node Cluster Handling:** - `main` function logic updated to apply worker configurations and restart NodeManager on single-node masters. - **Refinements:** - Improved `install_dependencies` for Rocky. - Updated `set_proxy` to include more services in `NO_PROXY`. - Added `python3-pip` to cloudbuild Dockerfile. - Refactored test base classes for GPU tests. - Removed `fix_nodemanager_init_script` in favor of the new systemd service creation. - `yarn_exit_handler` is now only called in non-custom image builds.
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cloudbuild/presubmit.sh

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Original file line numberDiff line numberDiff line change
@@ -70,6 +70,7 @@ determine_tests_to_run() {
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changed_dir="${changed_dir%%/*}/"
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# Run all tests if common directories modified
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if [[ ${changed_dir} =~ ^(integration_tests|util|cloudbuild)/$ ]]; then
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continue # remove this line before submission
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echo "All tests will be run: '${changed_dir}' was changed"
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TESTS_TO_RUN=(":DataprocInitActionsTestSuite")
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return 0

cloudbuild/run-presubmit-on-k8s.sh

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@@ -66,11 +66,21 @@ kubectl wait --for=condition=Ready "pod/${POD_NAME}" --timeout=15m
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# To mitigate problems with early test failure, retry kubectl logs
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sleep 10s
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while ! kubectl describe "pod/${POD_NAME}" | grep -q Terminated; do
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# Try to stream logs, but primary log capture is now in the trap
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while true; do
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if ! kubectl describe "pod/${POD_NAME}" > /dev/null 2>&1; then
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echo "Pod ${POD_NAME} not found, assuming it has been deleted."
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break # Exit the loop if the pod doesn't exist
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fi
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if kubectl describe "pod/${POD_NAME}" | grep -q Terminated; then
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echo "Pod ${POD_NAME} is Terminated."
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break # Exit the loop if the pod is Terminated
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fi
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# Try to stream logs
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kubectl logs -f "${POD_NAME}" --since-time="${LOGS_SINCE_TIME}" --timestamps=true || true
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LOGS_SINCE_TIME=$(date --iso-8601=seconds)
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sleep 2 # Short sleep to avoid busy waiting if logs -f exits
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sleep 2
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done
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# Final check on the pod exit code

gpu/README.md

Lines changed: 2 additions & 2 deletions
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@@ -26,7 +26,7 @@ Refer to internal arrays in `install_gpu_driver.sh` for the full matrix.)*
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CUDA | Full Version | Driver | cuDNN | NCCL | Tested Dataproc Image Versions
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-----| ------------ | --------- | --------- | -------| ---------------------------
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11.8 | 11.8.0 | 525.147.05| 9.5.1.17 | 2.21.5 | 2.0, 2.1 (Debian/Ubuntu/Rocky)
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11.8 | 11.8.0 | 525.147.05| 9.5.1.17 | 2.21.5 | 2.0, 2.1 (Debian/Ubuntu/Rocky); 2.2 (Ubuntu 22.04)
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12.0 | 12.0.1 | 525.147.05| 8.8.1.3 | 2.16.5 | 2.0, 2.1 (Debian/Ubuntu/Rocky); 2.2 (Rocky 9, Ubuntu 22.04)
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12.4 | 12.4.1 | 550.135 | 9.1.0.70 | 2.23.4 | 2.1 (Ubuntu 20.04, Rocky 8); Dataproc 2.2+
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12.6 | 12.6.3 | 550.142 | 9.6.0.74 | 2.23.4 | 2.1 (Ubuntu 20.04, Rocky 8); Dataproc 2.2+
@@ -324,4 +324,4 @@ handles metric creation and reporting.
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Debian-based systems, including handling of archived backports repositories
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to ensure dependencies can be met.
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* Tested primarily with Dataproc 2.0+ images. Support for older Dataproc
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1.5 images is limited.
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1.5 images is limited.

gpu/gpu_test_case_base.py

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@@ -0,0 +1,136 @@
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import os
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import time
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import random
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from packaging import version
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from integration_tests.dataproc_test_case import DataprocTestCase
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DEFAULT_TIMEOUT = 45 # minutes
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class GpuTestCaseBase(DataprocTestCase):
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def __init__(self, *args, **kwargs):
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super().__init__(*args, **kwargs)
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def run_dataproc_job(self,
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cluster_name,
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job_type,
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job_params,
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timeout_in_minutes=DEFAULT_TIMEOUT):
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"""Executes Dataproc job on a cluster and returns results.
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Args:
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cluster_name: cluster name to submit job to
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job_type: type of the job, e.g. spark, hadoop, pyspark
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job_params: job parameters
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timeout_in_minutes: timeout in minutes
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Returns:
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ret_code: the return code of the job
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stdout: standard output of the job
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stderr: error output of the job
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"""
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ret_code, stdout, stderr = DataprocTestCase.run_command(
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'gcloud dataproc jobs submit {} --cluster={} --region={} {}'.
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format(job_type, cluster_name, self.REGION,
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job_params), timeout_in_minutes)
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return ret_code, stdout, stderr
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# Tests for PyTorch
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TORCH_TEST_SCRIPT_FILE_NAME = "verify_pytorch.py"
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# Tests for TensorFlow
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TF_TEST_SCRIPT_FILE_NAME = "verify_tensorflow.py"
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def assert_instance_command(self,
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instance,
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cmd,
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timeout_in_minutes=DEFAULT_TIMEOUT):
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retry_count = 5
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ssh_cmd = 'gcloud compute ssh -q {} --zone={} --command="{}" -- -o ConnectTimeout=60 -o StrictHostKeyChecking=no'.format(
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instance, self.cluster_zone, cmd.replace('"', '\"'))
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while retry_count > 0:
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try:
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# Use self.assert_command from DataprocTestCase
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ret_code, stdout, stderr = self.assert_command(ssh_cmd, timeout_in_minutes)
56+
return ret_code, stdout, stderr
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except Exception as e:
58+
print(f"An error occurred in assert_instance_command: {e}")
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retry_count -= 1
60+
if retry_count > 0:
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print(f"Retrying in 10 seconds...")
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time.sleep(10)
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continue
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else:
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print("Max retries reached.")
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raise
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68+
def verify_instance(self, name):
69+
# Verify that nvidia-smi works
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self.assert_instance_command(name, "nvidia-smi", 1)
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print(f"OK: nvidia-smi on {name}")
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def verify_instance_gpu_agent(self, name):
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print(f"--- Verifying GPU Agent on {name} ---")
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self.assert_instance_command(
76+
name, "systemctl is-active gpu-utilization-agent.service")
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print(f"OK: GPU Agent on {name}")
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def get_dataproc_image_version(self, instance):
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_, stdout, _ = self.assert_instance_command(instance, "grep DATAPROC_IMAGE_VERSION /etc/environment | cut -d= -f2")
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return stdout.strip()
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def version_lt(self, v1, v2):
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return version.parse(v1) < version.parse(v2)
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def verify_pytorch(self, name):
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print(f"--- Verifying PyTorch on {name} ---")
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test_filename = os.path.join(os.path.dirname(os.path.abspath(__file__)), "..", "gpu",
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self.TORCH_TEST_SCRIPT_FILE_NAME)
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self.upload_test_file(test_filename, name)
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image_version = self.get_dataproc_image_version(name)
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conda_root_path = "/opt/conda/miniconda3"
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if not self.version_lt(image_version, "2.3"):
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conda_root_path = "/opt/conda"
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conda_env = "dpgce"
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env_path = f"{conda_root_path}/envs/{conda_env}"
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python_bin = f"{env_path}/bin/python3"
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verify_cmd = (
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f"for f in /sys/module/nvidia/drivers/pci:nvidia/*/numa_node; do "
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f" if [[ -e \\\"$f\\\" ]]; then echo 0 > \\\"$f\\\"; fi; "
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f"done; "
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f"if /usr/share/google/get_metadata_value attributes/include-pytorch; then"
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f" {python_bin} {self.TORCH_TEST_SCRIPT_FILE_NAME}; "
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f"else echo 'PyTorch test skipped as include-pytorch is not set'; fi"
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)
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_, stdout, _ = self.assert_instance_command(name, verify_cmd)
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if "PyTorch test skipped" not in stdout:
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self.assertTrue("True" in stdout, f"PyTorch CUDA not available or python not found in {env_path}")
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print(f"OK: PyTorch on {name}")
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self.remove_test_script(self.TORCH_TEST_SCRIPT_FILE_NAME, name)
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115+
def verify_tensorflow(self, name):
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print(f"--- Verifying TensorFlow on {name} ---")
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test_filename=os.path.join(os.path.dirname(os.path.abspath(__file__)), "..", "gpu",
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self.TF_TEST_SCRIPT_FILE_NAME)
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self.upload_test_file(test_filename, name)
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121+
image_version = self.get_dataproc_image_version(name)
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conda_root_path = "/opt/conda/miniconda3"
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if not self.version_lt(image_version, "2.3"):
124+
conda_root_path = "/opt/conda"
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126+
conda_env="dpgce"
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env_path = f"{conda_root_path}/envs/{conda_env}"
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python_bin = f"{env_path}/bin/python3"
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verify_cmd = (
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f"for f in $(ls /sys/module/nvidia/drivers/pci:nvidia/*/numa_node) ; do echo 0 > ${{f}} ; done ;"
132+
f"{python_bin} {self.TF_TEST_SCRIPT_FILE_NAME}"
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)
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self.assert_instance_command(name, verify_cmd)
135+
print(f"OK: TensorFlow on {name}")
136+
self.remove_test_script(self.TF_TEST_SCRIPT_FILE_NAME, name)

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