diff --git a/steering-files/src/main/resources/org/hps/steering/recon/PhysicsRun2021MCRecon_KF_WithSpacing_pass5_physics_HitSmear_HitKill_14272.lcsim b/steering-files/src/main/resources/org/hps/steering/recon/PhysicsRun2021MCRecon_KF_WithSpacing_pass5_physics_HitSmear_HitKill_14272.lcsim
new file mode 100644
index 000000000..64bb5aaa0
--- /dev/null
+++ b/steering-files/src/main/resources/org/hps/steering/recon/PhysicsRun2021MCRecon_KF_WithSpacing_pass5_physics_HitSmear_HitKill_14272.lcsim
@@ -0,0 +1,220 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ 14
+ false
+
+
+ false
+
+
+ pass5v9run14272_L1b_axial_hole.txt pass5v9run14272_L1b_stereo_hole.txt pass5v9run14272_L1t_axial_hole.txt pass5v9run14272_L1t_stereo_hole.txt pass5v9run14272_L2b_axial_hole.txt pass5v9run14272_L2b_stereo_hole.txt pass5v9run14272_L2t_axial_hole.txt pass5v9run14272_L2t_stereo_hole.txt
+ false
+
+
+ timeSmearing-2nsL4L7-4nsL1L3.txt
+ false
+
+
+ false
+ 0.8
+ 0.8
+
+
+ posSmearing_pass5_v9.txt
+ false
+
+
+ 1000
+
+
+ HodoscopeReadoutHits
+ CONFIG
+ true
+
+
+ HodoscopeReadoutHits
+ 8
+ CONFIG
+ true
+
+
+
+
+
+
+ 13.3
+
+
+ WARNING
+ EcalClusters
+
+
+ EcalClusters
+ EcalClustersCorr
+
+
+
+ SVTRawTrackerHits
+
+
+ .5
+ 1
+ Pileup
+ Migrad
+ true
+ 165
+ true
+ true
+ false
+ true
+ false
+ false
+ true
+ false
+
+
+ 24.0
+ 3.0
+ false
+ 400
+ 4.0
+ 1.0
+ 3.0
+ 3.0
+ true
+ true
+ false
+
+
+ true
+ true
+ 2
+ 1
+ 8.881915381218574
+ 39.249197341740356
+ 8.37847994612359
+ 11.546843987796496
+ 9
+ 9
+ 8
+ 8
+ 3
+ 2
+ 40.0
+ 5.0
+ 12.320066328390354
+ 9.206482863412027
+ 5.862027198856136
+ 5.508828061070076
+ 5
+ false
+ 400
+ 0.3473319986601534
+ true
+ 0.055
+ 0.045
+ true
+ -1.1
+ 7.197594353612735
+ false
+
+
+ KalmanFullTracks
+ true
+ false
+
+
+ EcalClustersCorr
+ KalmanFullTracks
+ KalmanFullTracks
+ TrackClusterMatcherMinDistance
+ UnconstrainedV0Candidates_KF
+ UnconstrainedV0Vertices_KF
+ BeamspotConstrainedV0Candidates_KF
+ BeamspotConstrainedV0Vertices_KF
+ TargetConstrainedV0Candidates_KF
+ TargetConstrainedV0Vertices_KF
+ FinalStateParticles_KF
+ OtherElectrons_KF
+ true
+ false
+ true
+ false
+ 0.055
+ 0.045
+ -1.1
+ 7.0
+ 7.0
+ 0.0
+ 40.0
+ 40
+ 40
+ false
+ true
+ true
+ false
+ true
+ true
+ UnconstrainedMollerCandidates_KF
+ UnconstrainedMollerVertices_KF
+ BeamspotConstrainedMollerCandidates_KF
+ BeamspotConstrainedMollerVertices_KF
+ TargetConstrainedMollerCandidates_KF
+ TargetConstrainedMollerVertices_KF
+
+
+ ${outputFile}_hit_eff.root
+
+
+ ${outputFile}.slcio
+
+
+
+
+
+
diff --git a/tracking/src/main/java/org/hps/recon/tracking/mctweaking/StripHitNHitsSmearer.java b/tracking/src/main/java/org/hps/recon/tracking/mctweaking/StripHitNHitsSmearer.java
new file mode 100644
index 000000000..0e74a87df
--- /dev/null
+++ b/tracking/src/main/java/org/hps/recon/tracking/mctweaking/StripHitNHitsSmearer.java
@@ -0,0 +1,273 @@
+package org.hps.recon.tracking;
+
+import hep.physics.vec.BasicHep3Vector;
+import hep.physics.vec.Hep3Vector;
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.FileReader;
+import java.io.InputStreamReader;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.Random;
+import java.util.logging.Level;
+import java.util.logging.Logger;
+import java.util.regex.Matcher;
+import java.util.regex.Pattern;
+import org.lcsim.detector.tracker.silicon.ChargeCarrier;
+import org.lcsim.detector.tracker.silicon.HpsSiSensor;
+import org.lcsim.detector.tracker.silicon.SiSensorElectrodes;
+import org.lcsim.event.EventHeader;
+import org.lcsim.event.RawTrackerHit;
+import org.lcsim.event.TrackerHit;
+import org.lcsim.event.base.BaseTrackerHit;
+import org.lcsim.geometry.Detector;
+import org.lcsim.lcio.LCIOUtil;
+import org.lcsim.recon.tracking.digitization.sisim.SiTrackerHitStrip1D;
+import org.lcsim.util.Driver;
+import org.lcsim.recon.tracking.digitization.sisim.TrackerHitType;
+import hep.physics.matrix.SymmetricMatrix;
+import org.lcsim.event.LCRelation;
+import org.lcsim.event.RelationalTable;
+import org.lcsim.event.base.BaseRelationalTable;
+import org.lcsim.event.SimTrackerHit;
+import org.lcsim.event.MCParticle;
+
+
+/**
+ *
+ * @author mgraham created 9/20/24
+ * This driver will randomize the position of strip clusters
+ * within a specified gaussian sigma.
+ *
+ * Strip collection:
+ * "StripClusterer_SiTrackerHitStrip1D" (default)
+ * Important Settables:
+ * smear: the sigma of smearing gaussian
+ *
+ * mg...right now, I smear all hits in all layers by the same amount
+ * independent of nHits.
+ */
+public class StripHitNHitsSmearer extends Driver {
+
+
+ String smearPositionFile="foobar";
+ // I may eventually want this, so keep it here
+ //private List _sensorsToSmear = new ArrayList();
+ //List of Sensors
+ //private List sensors = null;
+ private static final String SUBDETECTOR_NAME = "Tracker";
+ //private static Pattern layerPattern = Pattern.compile("L(\\d+)(t|b)");
+ //private static Pattern allPattern = Pattern.compile("L(\\all)");
+ private String stripHitInputCollectionName = "StripClusterer_SiTrackerHitStrip1D";
+ private String simHitCollectionName = "SimHits";
+ private Map smearMap;
+ private Map> mcParticleHitsByLayer = new HashMap>();
+ private boolean _debug = false;
+ Random r=new Random();
+
+ ///
+
+ private List siClusters = new ArrayList();
+ private List simTrackerHits = new ArrayList();
+
+ // private Map _siClustersAcceptMap = new HashMap();
+ //private Map _finalSiClustersAcceptMap = new HashMap();
+
+
+ public void setSmearPositionFile(String smearFile){
+ System.out.println("Setting SVT sensor position smearing file = "+smearFile);
+ this.smearPositionFile=smearFile;
+ }
+
+ public void setDebug(boolean debug) {
+ this._debug = debug;
+ }
+
+ public StripHitNHitsSmearer() {
+ }
+
+ @Override
+ public void detectorChanged(Detector detector) {
+ // Get the HpsSiSensor objects from the tracker detector element
+ smearMap = new HashMap<>();
+ String infile = "/org/hps/recon/tracking/svtTimeAndPositionSmearing/" + smearPositionFile;
+ InputStream inSmearing = this.getClass().getResourceAsStream(infile);
+
+
+ try (BufferedReader br = new BufferedReader( new InputStreamReader(inSmearing))) {
+ String line;
+ while ((line = br.readLine()) != null) {
+ line = line.trim();
+ System.out.println(line);
+
+ if (line.isEmpty() || line.startsWith("#")) continue;
+ String[] parts = line.split("\\s+");
+ System.out.println(parts[0]);
+ int hits = Integer.parseInt(parts[0]);
+ double smear = Double.parseDouble(parts[1]);
+ smearMap.put(hits, smear);
+ }
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+ }
+
+ @Override
+ public void process(EventHeader event) {
+ List smearedSiClusters=new ArrayList();
+ if (event.hasItem(stripHitInputCollectionName))
+ siClusters = (List) event.get(stripHitInputCollectionName);
+ else {
+ System.out.println("StripHitNHitsSmearer::process No Input Collection Found?? " + stripHitInputCollectionName);
+ return;
+ }
+ if (_debug)
+ System.out.println("Number of SiClusters Found = " + siClusters.size());
+
+ if (event.hasItem("TrackerHits"))
+ simTrackerHits = event.get(SimTrackerHit.class, "TrackerHits");
+ else {
+ System.out.println("StripHitNHitsSmearer::process No Input Collection Found?? " + "TrackerHits");
+ return;
+ }
+
+ int oldClusterListSize = siClusters.size();
+
+ RelationalTable rawtomc = new BaseRelationalTable(RelationalTable.Mode.MANY_TO_MANY, RelationalTable.Weighting.UNWEIGHTED);
+ if (event.hasCollection(LCRelation.class, "SVTTrueHitRelations")) {
+ List trueHitRelations = event.get(LCRelation.class, "SVTTrueHitRelations");
+ for (LCRelation relation : trueHitRelations) {
+ if (relation != null && relation.getFrom() != null && relation.getTo() != null) {
+ rawtomc.add(relation.getFrom(), relation.getTo());
+ }
+ }
+ }
+
+ for (TrackerHit siCluster : siClusters) { // Looping over all clusters
+
+ boolean isMC = true;
+ // Check if hits in cluster have matching MC particle
+ List rawHits = siCluster.getRawHits();
+ int total_simhits = 0;
+ MCParticle smearedParticle = null;
+ for (RawTrackerHit rth:rawHits) {
+ Set simhits = rawtomc.allFrom(rth);
+
+ for(SimTrackerHit simhit : simhits){
+ //get mcp that left simhit
+ MCParticle particle = simhit.getMCParticle();
+ smearedParticle = particle;
+ if(!mcParticleHitsByLayer.containsKey(particle)){
+ Set hitLayers = getLayersHitByMCP(particle, simTrackerHits);
+ mcParticleHitsByLayer.put(particle, hitLayers);
+ }
+ }
+
+ //System.out.println("MC LENGTH: " + simhits.size());
+ if (simhits.size() > 0) total_simhits++;
+ }
+ if (total_simhits == 0) {isMC = false;}
+
+
+
+ boolean smearedHit = false;
+ // get the sensor object of the cluster
+ HpsSiSensor sensor = (HpsSiSensor) ((RawTrackerHit) siCluster.getRawHits().get(0)).getDetectorElement();
+ Hep3Vector newPos=toHep3(siCluster.getPosition());//set the "new" variables to the original cluster position
+
+ if (isMC) {
+ int nhits = mcParticleHitsByLayer.get(smearedParticle).size();
+ if (_debug) {
+ System.out.println("Found MCParticle with " + nhits + "hits");
+ }
+ Double smearingValue = smearMap.get(nhits);
+ //get the local u position
+ Hep3Vector pos = globalToSensor(toHep3(siCluster.getPosition()), sensor);
+ double smearAmount = r.nextGaussian() * smearingValue;
+ double uPosNew=pos.x()+smearAmount;
+ //get the new global position
+ if (smearingValue > 0) {newPos=sensorToGlobal(toHep3(new double[]{uPosNew,pos.y(),pos.z()}),sensor);}
+
+ if (_debug)
+ System.out.println("Smearing this hit Layer = " + sensor.getName()
+ +" smearPositionSigma= " + smearingValue
+ + " old u = " + pos.x()
+ + " new u = " + uPosNew
+ + " amount smeared = " + smearAmount
+ + " Smeared?? = " + isMC);
+ if (_debug) {
+ System.out.println("original position = "+toHep3(siCluster.getPosition()).toString());
+ System.out.println("global og position = "+pos.toString());
+ }
+ // set the new position
+ // smearedTrackerHit.setPosition(new double[]{newPos.x(),newPos.y(),newPos.z()});
+
+ // add the smeared hit to list and mark it
+ // smearedSiClusters.add(smearedTrackerHit);
+ smearedHit=true;
+ }
+ //make a smeared hit...even if the sensor hit was not smeared, use newPos/newTime since they were filled with original pos/time above
+ SiTrackerHitStrip1D smearedTrackerHit=
+ new SiTrackerHitStrip1D(newPos, new SymmetricMatrix(3,siCluster.getCovMatrix(),true),
+ siCluster.getdEdx(),siCluster.getTime(),(List)siCluster.getRawHits(),
+ TrackerHitType.decoded(siCluster.getType()));
+
+ smearedSiClusters.add(smearedTrackerHit);
+
+ }
+
+ if (_debug)System.out.println("New Cluster List Has " + smearedSiClusters.size() + "; old List had " + oldClusterListSize);
+ // TODO flag not used
+ int flag = LCIOUtil.bitSet(0, 31, true); // Turn on 64-bit cell ID.
+ event.remove(this.stripHitInputCollectionName);
+ event.put(this.stripHitInputCollectionName, smearedSiClusters, SiTrackerHitStrip1D.class, 0, toString());
+ }
+
+ @Override
+ public void endOfData() {
+ }
+
+ private Set getLayersHitByMCP(MCParticle mcp, List simhits){
+ Set layerhitsMap = new HashSet();
+ for(SimTrackerHit simhit : simhits){
+ MCParticle simhitmcp = simhit.getMCParticle();
+ if(simhitmcp == mcp){
+ int layer = simhit.getLayer();
+ if(!layerhitsMap.contains(layer))
+ layerhitsMap.add(layer);
+ }
+ }
+ return layerhitsMap;
+ }
+
+ //Converts double array into Hep3Vector
+ private Hep3Vector toHep3(double[] arr) {
+ return new BasicHep3Vector(arr[0], arr[1], arr[2]);
+ }
+
+ //Converts position into sensor frame
+ private Hep3Vector globalToSensor(Hep3Vector hitpos, HpsSiSensor sensor) {
+ SiSensorElectrodes electrodes = sensor.getReadoutElectrodes(ChargeCarrier.HOLE);
+ if (electrodes == null) {
+ electrodes = sensor.getReadoutElectrodes(ChargeCarrier.ELECTRON);
+ System.out.println("Charge Carrier is NULL");
+ }
+ return electrodes.getGlobalToLocal().transformed(hitpos);
+ }
+
+ //Converts position from local (sensor) to global frame
+ private Hep3Vector sensorToGlobal(Hep3Vector hitpos, HpsSiSensor sensor) {
+ SiSensorElectrodes electrodes = sensor.getReadoutElectrodes(ChargeCarrier.HOLE);
+ if (electrodes == null) {
+ electrodes = sensor.getReadoutElectrodes(ChargeCarrier.ELECTRON);
+ System.out.println("Charge Carrier is NULL");
+ }
+ return electrodes.getLocalToGlobal().transformed(hitpos);
+ }
+}
diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_axial_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_axial_hole.txt
new file mode 100644
index 000000000..358d5bf73
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_axial_hole.txt
@@ -0,0 +1,102 @@
+2 0.894002
+3 1.000000
+4 1.000000
+5 1.000000
+6 1.000000
+7 0.994727
+8 1.000000
+9 1.000000
+10 1.000000
+11 0.996700
+12 1.000000
+13 0.996799
+14 0.994605
+15 0.989254
+16 1.000000
+17 1.000000
+18 1.000000
+19 1.000000
+20 1.000000
+21 1.000000
+22 1.000000
+23 0.995622
+24 0.977429
+25 1.000000
+26 0.997909
+27 0.967634
+28 0.981082
+29 0.998612
+30 0.984064
+31 0.994557
+32 0.994424
+33 0.980736
+34 1.000000
+35 1.000000
+36 1.000000
+37 0.989011
+38 1.000000
+39 0.991697
+40 0.992050
+41 0.958029
+42 1.000000
+43 0.982527
+44 1.000000
+45 1.000000
+46 1.000000
+47 0.986147
+48 1.000000
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+50 1.000000
+51 1.000000
+52 1.000000
+459 1.000000
+460 1.000000
+461 1.000000
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+463 0.954622
+464 0.956250
+465 1.000000
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+468 0.970105
+469 1.000000
+470 1.000000
+471 0.994615
+472 1.000000
+473 0.959235
+474 1.000000
+475 0.975232
+476 0.981997
+477 1.000000
+478 0.998947
+479 0.979802
+480 1.000000
+481 0.988016
+482 0.950350
+483 0.981125
+484 1.000000
+485 1.000000
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+488 0.970506
+489 1.000000
+490 0.990533
+491 1.000000
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+493 1.000000
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+495 1.000000
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+497 0.984967
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+499 1.000000
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+508 1.000000
+509 1.000000
diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_stereo_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_stereo_hole.txt
new file mode 100644
index 000000000..d84389d76
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1b_stereo_hole.txt
@@ -0,0 +1,95 @@
+2 1.000000
+3 1.000000
+4 1.000000
+5 1.000000
+6 1.000000
+7 1.000000
+8 1.000000
+9 1.000000
+10 1.000000
+11 1.000000
+12 0.963777
+13 0.991417
+14 1.000000
+15 0.969841
+16 1.000000
+17 1.000000
+18 1.000000
+19 0.980649
+20 1.000000
+21 0.986436
+22 0.995899
+23 1.000000
+24 0.999190
+25 1.000000
+26 0.985135
+27 1.000000
+28 0.984020
+29 1.000000
+30 0.969997
+31 0.999023
+32 1.000000
+33 0.979681
+34 0.981038
+35 0.994157
+36 0.950103
+37 0.980258
+38 1.000000
+39 1.000000
+40 0.977011
+41 1.000000
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+456 1.000000
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+467 0.968421
+468 0.945946
+469 0.865497
+470 0.976744
+471 0.912755
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+473 1.000000
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+482 0.963692
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+484 0.996177
+485 0.989817
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+509 0.982319
diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_axial_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_axial_hole.txt
new file mode 100644
index 000000000..222c95b95
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_axial_hole.txt
@@ -0,0 +1,45 @@
+2 1.000000
+3 1.000000
+4 0.998295
+5 1.000000
+6 0.990976
+7 0.987128
+8 0.980465
+9 0.998807
+10 1.000000
+11 0.989502
+12 0.988112
+13 1.000000
+14 1.000000
+15 1.000000
+16 1.000000
+17 0.986804
+18 0.997378
+19 1.000000
+20 0.986127
+21 0.993355
+22 1.000000
+23 0.954545
+24 1.000000
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+503 1.000000
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+507 0.992217
+508 0.967680
+509 1.000000
diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_stereo_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_stereo_hole.txt
new file mode 100644
index 000000000..6cf11ba94
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L1t_stereo_hole.txt
@@ -0,0 +1,64 @@
+2 1.000000
+3 1.000000
+4 1.000000
+5 0.985021
+6 1.000000
+7 1.000000
+8 1.000000
+9 1.000000
+10 1.000000
+11 1.000000
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+14 0.991489
+15 1.000000
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+17 0.966822
+18 1.000000
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diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_axial_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_axial_hole.txt
new file mode 100644
index 000000000..2eeef801d
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_axial_hole.txt
@@ -0,0 +1,179 @@
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diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_stereo_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_stereo_hole.txt
new file mode 100644
index 000000000..ebf456214
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2b_stereo_hole.txt
@@ -0,0 +1,179 @@
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diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_axial_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_axial_hole.txt
new file mode 100644
index 000000000..07e61a181
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_axial_hole.txt
@@ -0,0 +1,114 @@
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diff --git a/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_stereo_hole.txt b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_stereo_hole.txt
new file mode 100644
index 000000000..438c33e8a
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/efficiencyCorrections/pass5v9run14272_L2t_stereo_hole.txt
@@ -0,0 +1,143 @@
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diff --git a/tracking/src/main/resources/org/hps/recon/tracking/svtTimeAndPositionSmearing/posSmearing_pass5_v9.txt b/tracking/src/main/resources/org/hps/recon/tracking/svtTimeAndPositionSmearing/posSmearing_pass5_v9.txt
new file mode 100644
index 000000000..391c4b5b2
--- /dev/null
+++ b/tracking/src/main/resources/org/hps/recon/tracking/svtTimeAndPositionSmearing/posSmearing_pass5_v9.txt
@@ -0,0 +1,14 @@
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\ No newline at end of file