Add precompile step for rePCA (#749)

* add precompile workfload for PCA

* ignore version specific manifests

* patch bump, NEWS

Author: palday

.gitignore

@@ -4,11 +4,10 @@ docs/src/assets/*.svg
 test/scratch.jl
 tune.json
 Manifest.toml
-Manifest-v1.*.toml
+Manifest-v*.toml
 settings.json
 docs/jmd
 LocalPreferences.toml
 benchmark.md
-
 lcov.info
 coverage/

NEWS.md

@@ -1,3 +1,7 @@
+MixedModels v4.25.4 Release Notes
+==============================
+- Added additional precompilation for rePCA. [#749]
+
 MixedModels v4.25.3 Release Notes
 ==============================
 - Fix a bug in the handling of rank deficiency in the `simulate[!]` code. This has important correctness implications for bootstrapping models with rank-deficient fixed effects (as can happen in the case of partial crossing of the fixed effects / missing cells). [#778]
@@ -545,6 +549,7 @@ Package dependencies
 [#740]: https://github.com/JuliaStats/MixedModels.jl/issues/740
 [#744]: https://github.com/JuliaStats/MixedModels.jl/issues/744
 [#748]: https://github.com/JuliaStats/MixedModels.jl/issues/748
+[#749]: https://github.com/JuliaStats/MixedModels.jl/issues/749
 [#755]: https://github.com/JuliaStats/MixedModels.jl/issues/755
 [#756]: https://github.com/JuliaStats/MixedModels.jl/issues/756
 [#767]: https://github.com/JuliaStats/MixedModels.jl/issues/767

Project.toml

@@ -1,7 +1,7 @@
 name = "MixedModels"
 uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316"
 author = ["Phillip Alday <[email protected]>", "Douglas Bates <[email protected]>", "Jose Bayoan Santiago Calderon <[email protected]>"]
-version = "4.25.3"
+version = "4.25.4"
 
 [deps]
 Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45"

src/MixedModels.jl

@@ -213,15 +213,19 @@ include("profile/profile.jl")
     sleepstudy = dataset(:sleepstudy)
     contra = dataset(:contra)
     progress = false
+    io = IOBuffer()
     @compile_workload begin
         # all calls in this block will be precompiled, regardless of whether
         # they belong to your package or not (on Julia 1.8 and higher)
 
         # these are relatively small models and so shouldn't increase precompile times all that much
         # while still massively boosting load and TTFX times
-        fit(MixedModel,
+        m = fit(MixedModel,
             @formula(reaction ~ 1 + days + (1 + days | subj)),
             sleepstudy; progress)
+        show(io, m)
+        show(io, m.PCA.subj)
+        show(io, m.rePCA)
         fit(MixedModel,
             @formula(use ~ 1 + age + abs2(age) + urban + livch + (1 | urban & dist)),
             contra,