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DAtest

This is a package for comparing different differential abundance methods used in microbial marker-gene (e.g. 16S rRNA), RNA-seq and protein/metabolite abundance analysis.

There are many methods for testing differential abundance and no gold standard, but results can vary a lot between the different statistical methods. This package aims at aiding the analyst in choosing a method for a specific dataset based on empirical testing.

Overview of this wiki:

• Installation
• How to use this package
• Implemented methods
• Extra features

If you find bugs or have suggestions for features, please post them as GitHub issues