Merge branch 'develop' into develop

Author: ziofil

.codecov.yml

@@ -5,5 +5,5 @@ coverage:
         target: 89%
     patch:
       default:
-        target: auto
+        target: 99%
         threshold: 0%

.github/CHANGELOG.md

@@ -9,6 +9,9 @@
 * Added the `serialize` module to save MrMustard objects to file.
   [(#451)](https://github.com/XanaduAI/MrMustard/pull/451)
 
+* Added `isort` to run before black upon `make format` to sort Python imports.
+  [(#506)](https://github.com/XanaduAI/MrMustard/pull/506)
+
 ### Breaking changes
 
 ### Improvements
@@ -43,6 +46,9 @@
 * Fix object visualizations in VS Code Notebooks by using the built-in display tools.
   [(#425)](https://github.com/XanaduAI/MrMustard/pull/425)
 
+* Fix the TensorFlow issue with the expected number of gradients  in `custom_gradient`.
+  [(#506)](https://github.com/XanaduAI/MrMustard/pull/506)
+
 ### Documentation
 
 ### Tests
@@ -54,6 +60,7 @@
 [Austin Lund](https://github.com/aplund)
 [Kasper Nielsen](https://github.com/kaspernielsen96)
 [Matthew Silverman](https://github.com/timmysilv)
+[Ali Asadi](https://github.com/maliasadi)
 
 
 ---

.github/workflows/tests_docs.yml

@@ -39,6 +39,5 @@ jobs:
       - name: Run tests
         run: |
           python -m pytest --doctest-modules mrmustard/math/parameter_set.py
-          python -m pytest --doctest-modules mrmustard/physics/ansatze.py
-          python -m pytest --doctest-modules mrmustard/physics/representations.py
+          python -m pytest --doctest-modules mrmustard/physics/ansatz
           python -m pytest --doctest-modules mrmustard/lab_dev

.pylintrc

@@ -28,4 +28,4 @@ ignored-classes=numpy,tensorflow,scipy,networkx,strawberryfields,thewalrus
 # can either give multiple identifier separated by comma (,) or put this option
 # multiple time (only on the command line, not in the configuration file where
 # it should appear only once).
-disable=fixme,no-member,line-too-long,invalid-name,too-many-lines,redefined-builtin,too-many-locals,duplicate-code,too-many-arguments,too-few-public-methods,no-else-return,isinstance-second-argument-not-valid-type,no-self-argument, arguments-differ
+disable=fixme,no-member,line-too-long,invalid-name,too-many-lines,redefined-builtin,too-many-locals,duplicate-code,too-many-arguments,too-few-public-methods,no-else-return,isinstance-second-argument-not-valid-type,no-self-argument, arguments-differ, protected-access

Makefile

@@ -2,6 +2,14 @@ PYTHON3 := $(shell which python3 2>/dev/null)
 TESTRUNNER := -m pytest tests -p no:warnings
 COVERAGE := --cov=mrmustard --cov-report=html --cov-append
 
+ifdef check
+    CHECK := --check --diff
+    ICHECK := --check
+else
+    CHECK :=
+    ICHECK :=
+endif
+
 .PHONY: help
 help:
 	@echo "Please use \`make <target>' where <target> is one of"
@@ -10,7 +18,7 @@ help:
 	@echo "  dist               to package the source distribution"
 	@echo "  clean              to delete all temporary, cache, and build files"
 	@echo "  clean-docs         to delete all built documentation"
-	@echo "  format             to run black formatting"
+	@echo "  format [check=1]   to run isort and black formatting; use with 'check=1' to check instead of modify"
 	@echo "  test               to run the test suite for entire codebase"
 	@echo "  coverage           to generate a coverage report for entire codebase"
 
@@ -59,7 +67,8 @@ clean-docs:
 
 .PHONY : format
 format:
-	black -l 100 mrmustard/ tests/
+	isort --py 312 --profile black -l 100 -p mrmustard/ tests/ $(ICHECK)
+	black -t py310 -t py311 -t py312 -l 100 mrmustard/ tests/ $(CHECK)
 
 .PHONY : lint
 lint:

doc/code/lab_dev.rst

@@ -4,7 +4,6 @@ mrmustard.lab_dev
 .. toctree::
     :maxdepth: 1
 
-    lab_dev/wires
     lab_dev/circuit_components
     lab_dev/states
     lab_dev/transformations

doc/code/lab_dev/wires.rst

@@ -4,7 +4,7 @@ mrmustard.physics
 .. toctree::
     :maxdepth: 1
 
-    physics/ansatze
+    physics/wires
     physics/representations
 
 .. toctree::

doc/code/physics.rst

@@ -1,8 +1,8 @@
 Calculations on Bargmann objects
 ================================
 
-.. currentmodule:: mrmustard.physics.bargmann
+.. currentmodule:: mrmustard.physics.bargmann_utils
 
-.. automodapi:: mrmustard.physics.bargmann
+.. automodapi:: mrmustard.physics.bargmann_utils
     :no-heading:
     :include-all-objects: