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lines changed Original file line number Diff line number Diff line change @@ -25,6 +25,40 @@ biomedical research using the `conda <https://conda.io>`_ package manager.
2525Usage
2626=====
2727
28+ With Pixi
29+ ---------
30+
31+ Pixi is a modern, extremely fast, frontend for conda packages and environments.
32+ First, `install pixi `_.
33+ Then, configure pixi to use bioconda in addition to it's default (`conda-forge `_)::
34+
35+ pixi config set default-channels '["conda-forge", "bioconda"]'
36+
37+ Afterwards, you can install any package from bioconda globally::
38+
39+ pixi global install <somepackage>
40+
41+ or locally into an environment associated with a directory::
42+
43+ cd myproject
44+ pixi init
45+ pixi add <somepackage>
46+
47+ While globally installed packages are available everywhere on your system,
48+ locally installed packages are only available when you activate the associated
49+ environment via::
50+
51+ pixi shell
52+
53+ in the respective directory.
54+ For more options and details see the `pixi documentation <https://pixi.sh >`__.
55+
56+ .. _`Install pixi` : https://pixi.sh/latest/installation
57+ .. _`conda-forge` : https://conda-forge.org/docs/index.html
58+
59+ With Conda
60+ ----------
61+
2862First, `install conda `_.
2963
3064Then perform a one-time set up of Bioconda with the following commands. This
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