Installing on Mac OSX 10.14.2 (or any newer version of Mac that dont use Xcode 9.4
Gives the following error:
ERROR: Command errored out with exit status 1:
command: /Users/edankrolewicz/.virtualenvs/marketing/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"'; __file__='"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-wheel-by0sb4lm --python-tag cp37
cwd: /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/
Complete output (18 lines):
Version: 1.1.24
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.7
copying fastcluster.py -> build/lib.macosx-10.7-x86_64-3.7
running build_ext
building '_fastcluster' extension
creating build/temp.macosx-10.7-x86_64-3.7
creating build/temp.macosx-10.7-x86_64-3.7/src
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/edankrolewicz/anaconda3/include -arch x86_64 -I/Users/edankrolewicz/anaconda3/include -arch x86_64 -I/Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/numpy/core/include -I/Users/edankrolewicz/anaconda3/include/python3.7m -c src/fastcluster_python.cpp -o build/temp.macosx-10.7-x86_64-3.7/src/fastcluster_python.o
warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
src/fastcluster_python.cpp:55:10: fatal error: 'cmath' file not found
#include <cmath> // for std::abs, std::pow, std::sqrt
^~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for fastcluster
Running setup.py clean for fastcluster
Failed to build fastcluster
Installing collected packages: fastcluster, dedupe, csvdedupe
Found existing installation: fastcluster 1.1.25
Uninstalling fastcluster-1.1.25:
Successfully uninstalled fastcluster-1.1.25
Running setup.py install for fastcluster ... error
ERROR: Command errored out with exit status 1:
command: /Users/edankrolewicz/.virtualenvs/marketing/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"'; __file__='"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-record-13eqto0y/install-record.txt --single-version-externally-managed --compile --install-headers /Users/edankrolewicz/.virtualenvs/marketing/include/site/python3.7/fastcluster
cwd: /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/
Complete output (18 lines):
Version: 1.1.24
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.7
copying fastcluster.py -> build/lib.macosx-10.7-x86_64-3.7
running build_ext
building '_fastcluster' extension
creating build/temp.macosx-10.7-x86_64-3.7
creating build/temp.macosx-10.7-x86_64-3.7/src
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/edankrolewicz/anaconda3/include -arch x86_64 -I/Users/edankrolewicz/anaconda3/include -arch x86_64 -I/Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/numpy/core/include -I/Users/edankrolewicz/anaconda3/include/python3.7m -c src/fastcluster_python.cpp -o build/temp.macosx-10.7-x86_64-3.7/src/fastcluster_python.o
warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
src/fastcluster_python.cpp:55:10: fatal error: 'cmath' file not found
#include <cmath> // for std::abs, std::pow, std::sqrt
^~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
Rolling back uninstall of fastcluster
Moving to /Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/__pycache__/fastcluster.cpython-37.pyc
from /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-uninstall-p5fa2ylf/fastcluster.cpython-37.pyc
Moving to /Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/_fastcluster.cpython-37m-darwin.so
from /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-uninstall-egsyoeqk/_fastcluster.cpython-37m-darwin.so
Moving to /Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/fastcluster-1.1.25.dist-info/
from /Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/~astcluster-1.1.25.dist-info
Moving to /Users/edankrolewicz/.virtualenvs/marketing/lib/python3.7/site-packages/fastcluster.py
from /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-uninstall-egsyoeqk/fastcluster.py
ERROR: Command errored out with exit status 1: /Users/edankrolewicz/.virtualenvs/marketing/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"'; __file__='"'"'/private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-install-6zw5_c39/fastcluster/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/2w/53v1v9654nbgx13t9zsc9q_40000gn/T/pip-record-13eqto0y/install-record.txt --single-version-externally-managed --compile --install-headers /Users/edankrolewicz/.virtualenvs/marketing/include/site/python3.7/fastcluster Check the logs for full command output.
suggest that Csvdedupe/ dedupe repos Readme includes directions on how to troubleshoot this case.
Installing on Mac OSX 10.14.2 (or any newer version of Mac that dont use Xcode 9.4
Gives the following error:
Testing Solutions from here:
https://stackoverflow.com/questions/11094718/error-command-gcc-failed-with-exit-status-1-while-installing-eventlet
https://stackoverflow.com/questions/52425766/stdlibc-headers-not-found-error-on-xcode-10
suggest that Csvdedupe/ dedupe repos Readme includes directions on how to troubleshoot this case.