retain old functionality for benchmark purposes

Author: WardDeb

pyproject.toml

@@ -64,19 +64,19 @@ packages = ["deeptools"]
 
 [project.scripts]
 alignmentSieve = "deeptools.alignmentSieve:main"
-#bamCompare_old = "deeptools.bamCompare:main"
-#bamCoverage_old = "deeptools.bamCoverage:main"
+bamCompare_old = "deeptools.bamCompare:main"
+bamCoverage_old = "deeptools.bamCoverage:main"
 bamPEFragmentSize = "deeptools.bamPEFragmentSize:main"
 bigwigAverage = "deeptools.bigwigAverage:main"
 bigwigCompare = "deeptools.bigwigCompare:main"
 computeGCBias = "deeptools.computeGCBias:main"
-#computeMatrix_old = "deeptools.computeMatrix:main"
+computeMatrix_old = "deeptools.computeMatrix:main"
 computeMatrixOperations = "deeptools.computeMatrixOperations:main"
 correctGCBias = "deeptools.correctGCBias:main"
 deeptools = "deeptools.deeptools_list_tools:main"
 estimateReadFiltering = "deeptools.estimateReadFiltering:main"
 estimateScaleFactor = "deeptools.estimateScaleFactor:main"
-#multiBamSummary_old = "deeptools.multiBamSummary:main"
+multiBamSummary_old = "deeptools.multiBamSummary:main"
 multiBigwigSummary = "deeptools.multiBigwigSummary:main"
 plotCorrelation = "deeptools.plotCorrelation:main"
 plotCoverage = "deeptools.plotCoverage:main"