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Move away from using rfam database #3237

@ivasio

Description

@ivasio

Goals:

  1. allow our users to easily run example sql database sources on an interesting and real dataset, without any upfront setup
  2. use it internally to test mysql as a data source, rfam has plenty of indexes and foregin references + some pretty big tables

Requirements

  • bring up an mysql instance with a restored dump
  • allow for read only, no ssl access (ssl setup is PITA for mysql and we want to make it easy for our users)
  • pick one of our cloud providers for managed service. you may encounter a problem with mandatory SSL. we can also go for digital ocean
  • you may consider a server instance where some tables trimmed so we are not overloaded with huge queries

Tasks

    • update all our docs and code with new rfam connections string
    • enable all rfam tests hidden under rfam marker

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tech-debtLeftovers from previous work. Should be fixed over time

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