Skip to content

Plot BLAST Alignments #18

@Adamtaranto

Description

@Adamtaranto

I'd like to add support for pre-computed alignments i.e. from BLAST, LASTZ, Minimap2, or Nucmer. Also mentioned in #5, addresses #12.

Logic for processing alignments is in flexidot.utils.matching func find_match_pos_diag() in PR #17

Options:

  1. Take alignments in a simplified standard format rather than have Flexidot process multiple input formats. Allow users to handle filtering and formatting of alignments.

  2. Add module to run alignment tool of choice on all pairwise combinations and generate standard alignment inputs.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions