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Description
I'd like to add support for pre-computed alignments i.e. from BLAST, LASTZ, Minimap2, or Nucmer. Also mentioned in #5, addresses #12.
Logic for processing alignments is in flexidot.utils.matching func find_match_pos_diag() in PR #17
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Take alignments in a simplified standard format rather than have Flexidot process multiple input formats. Allow users to handle filtering and formatting of alignments.
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Add module to run alignment tool of choice on all pairwise combinations and generate standard alignment inputs.
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