Update to Python 3.10, fix GitHub workflow and automated tests #35
Workflow file for this run
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| name: InterMine WS Python CI | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| services: | |
| # Label used to access the service container | |
| postgres: | |
| image: postgres:14 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '11' | |
| - name: Set up python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| set -euo pipefail | |
| sudo apt-get install libxml2-dev libxslt-dev python3-dev | |
| python -m pip install --upgrade pip | |
| pip install -U setuptools | |
| pip install -r requirements.txt | |
| - name: Install PostgreSQL client | |
| run: | | |
| set -euo pipefail | |
| sudo apt-get update -y | |
| sudo apt-get install -y libpq-dev postgresql-client | |
| sudo service postgresql start | |
| - name: Run unit tests | |
| run: | | |
| set -euo pipefail | |
| ./config/ci/init-solr.sh ${GITHUB_WORKSPACE} | |
| ./config/ci/init.sh ${GITHUB_WORKSPACE} http://localhost:8080/intermine-demo | |
| python setup.py test | |
| python setup.py livetest |