* Update CONTRIBUTING.md to indicate PRs should be to the new `dev` branch * Update RELEASING.md to reflect new workflow with the `dev` branch * Set Default uniform_shift to False (sandialabs#313) * Make uniform shift default false and fix test_core * Allow for non-uniform shift for impedance * update docstrings (sandialabs#326) * damping naming and consistently change radiation damping (sandialabs#328) * run CI + codeQL on dev PRs/pushses * Fix test failures (sandialabs#330) * fix tests * fix pioneer * actually test power solution for irregular wave (sandialabs#327) * Update test_integration with new scaling (sandialabs#333) * Phase Realizations Demo and Docs (sandialabs#315) * Pioneer tutorial realizations demo Add frequency array and realization study to beginning of pioneer tutorial * Update pioneer * Clean pioneer and update docs * remove print * Units * Update pioneer plots * Waves before frequencies * Explain less frequencies * Minor updates * Update pioneer * Merge branch 'dev' of https://github.com/sandialabs/WecOptTool into phases_demo * issue 321 fd_to_td() bug (sandialabs#329) * bug bix : DC and Nyquist frequency should not be devided by two before ifft * Changed td_to_fd to scale single sided frequency components rather than TD signal * minor bug fix from issue332 sandialabs#332 * nodf -> ndof (sandialabs#334) * add DOI for Daniel's paper (sandialabs#336) * Tutorial cleanup (sandialabs#339) * run CI on PRs against dev branch * revamped tutorial 1, including fix for sandialabs#293 * more tutorial cleanup and editorial changes * more cleanup and incorporated changes in sandialabs#315 * fixed tutorial 2 colormaps * finishing touches * reverted a few accidental changes * fixes as per Jeff's review comments --------- Co-authored-by: Ryan Coe <rcoe@sandia.gov> * Utils dev - replaces old utilities PR (sandialabs#343) * run CI on PRs against dev branch * coppied fundamental utility files * import utilities module * added utilities funtions to tut1 * added bem plot from utils * added bem plot from utils * updated sankey plot * updated check_radiation_damping * cleared outputs * corrected bug * changed Zi to hydro_impedance to be consistent with our variables name python convention * PR review edits * add grid to plots * removed draft functions in utilities.py * typo * Fixed one more typo I found while reviewing Daniel's changes --------- Co-authored-by: Ryan Coe <rcoe@sandia.gov> Co-authored-by: Michael Devin <michaelcdevin@outlook.com> * Post process docstrings; use loops for multiple realizations (sandialabs#337) * post_processing docstrings - examples - parameters (order) * handle multiple phase realizations internally * Update wecopttool/core.py * making outputs lists * Update implementation to function with tutorial 1 for now * Update tutorials * Update LUPA * Make sure same WEC is passed in * Add test_utilities Revert "Add test_utilities" This reverts commit 27399f0. * Update utilities module * Update utilities * Update test_utilities * Update tutorial 1 utilities call --------- Co-authored-by: Carlos A. Michelén Ströfer <cmichel@sandia.gov> Co-authored-by: Carlos A. Michelén Ströfer <c.michelen.strofer@gmail.com> Co-authored-by: jtgrasb <jtgrasb@sandia.gov> Co-authored-by: jtgrasb <87095491+jtgrasb@users.noreply.github.com> * v3.0.0 * Lower tolerance for new test to fix CI failing occasionally * hyperlinks no longer have formatting, plus other small adjustments (sandialabs#348) * Merge to dev, not main (sandialabs#349) * Dev version of documentation site (sandialabs#347) * added initial file changes based on sphinx_multiversion docs and WEC-Sim implementation * removed sphinx-multiversion since it is no longer supported and made manual multiversion * now uses absolute paths, commented out linkcheck for debugging * fixed docstring errors in utilities module * updating files again that somehow got reverted * fixing path in conf.py * don't run tutorials (will revert later) * handle file moves correctly, fixed if statement to make other versions appear * fixed two bugs in versions template * reverted temp changes, changes latest to main * switched latest to main * main branch now in root directory of pages * fixed URLs with change from last commit * make other branches visible before building * switched main branch tag for more testing * fixed typo * switched dev branch to an existing branch * renamed main to latest, changed version.html file name to avoid confusion * added prints about moving files so Sphinx output isn't misleading * fixed typo with quotations * changed versions.html name back because that broke things I guess * modified contributing documentation to reflect changes * add logic to remove duplicate 'latest' branch * Fixed pathing when already on latest * remove typo * Troubleshooting complete, switching back to correct branches for deployment * Removed extra word in docstring * removed redundant function * fixed pathing so returns to same file (and fixes tutorial/API docs) * changed latest branch for demonstration * switched back latest branch for deployment * updated with new Capytaine docs URL * Add warnings when adding inertia and hydrostatic stiffness automatically (sandialabs#346) * CI workflow cleanup (sandialabs#352) * removed conda environment from workflows since newer capytaine/wavespectra work with Windows * fixed unnecessary capitalization * still create CI conda environment to fix Mac environment failures * added conda env fully back in, push workflow deploys docs, split PR workflow * conda environment activates again * mambaforge instead of miniforge * manual cache reset * reset to older version of setup-miniconda to troubleshoot * Specify NumPy version <2.0 since it breaks autograd * v3.0.1 (sandialabs#360) * Revert "v3.0.1 (sandialabs#360)" (sandialabs#361) This reverts commit f79ff8b. * Update pyproject.toml * Test out lid feature * Add lid to pioneer and remove extra files * Revert LUPA and add lid comment * Revert LUPA bem data * Fix pioneer * Test lid LUPA * Update LUPA with lid * LUPA lid * Revert LUPA unnecessary changes * Resolve Daniel's suggestions --------- Co-authored-by: Carlos A. Michelén Ströfer <cmichel@sandia.gov> Co-authored-by: Ryan Coe <rcoe@sandia.gov> Co-authored-by: Daniel Gaebele <86246113+dtgaebe@users.noreply.github.com> Co-authored-by: Michael Devin <michaelcdevin@outlook.com> Co-authored-by: Carlos A. Michelén Ströfer <c.michelen.strofer@gmail.com> Co-authored-by: mcdevin <mcdevin@sandia.gov>