feat: Add pre-commit hooks to pipeline template

Co-authored-by: mashehu <[email protected]>

Author: edmundmiller

.pre-commit-hooks.yaml

@@ -16,3 +16,4 @@
   files: ^subworkflows/.*/.*/.*\.nf$
   pass_filenames: true
   # args: []
+# TODO lint-pipeline

nf_core/pipeline-template/.pre-commit-config.yaml

@@ -11,3 +11,9 @@ repos:
     hooks:
       - id: editorconfig-checker
         alias: ec
+  - repo: https://github.com/nf-core/tools
+    rev: "2.14.1"
+    hooks:
+      - id: lint-modules
+      - id: lint-subworkflows
+      # TODO lint-pipeline