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1 parent 003a9d7 commit fe337a8Copy full SHA for fe337a8
src/smriprep/workflows/surfaces.py
@@ -296,19 +296,15 @@ def init_surface_recon_wf(
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name='check_subjects_dir',
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)
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- # Pretend to be the autorecon1 node so fsnative2t1w_xfm gets run ASAP
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- fs_base_inputs = autorecon1 = pe.Node(FreeSurferSource(), name='fs_base_inputs')
+ # Hook up get_surfaces immediately,
+ # pretend to be the autorecon1 node so fsnative2t1w_xfm gets run ASAP
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+ autorecon1 = get_surfaces
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workflow.connect([
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(inputnode, check_subjects_dir, [
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('subjects_dir', 'subjects_dir'),
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('subject_id', 'subject_id'),
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]),
- (check_subjects_dir, fs_base_inputs, [
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- ('subjects_dir', 'subjects_dir'),
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- ('subject_id', 'subject_id'),
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- ]),
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- # Generate mid-thickness surfaces
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(check_subjects_dir, get_surfaces, [
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