Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  2•0•0•0•Updated Nov 2, 2025Nov 2, 2025

• bioconductor-training

  Public

  Bioconductor/bioconductor-training’s past year of commit activity
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •27•51•6•0•Updated Nov 2, 2025Nov 2, 2025

• SplicingGraphs

  Public
  Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

  bioconductor-package

  R

  •1•2•0•1•Updated Nov 2, 2025Nov 2, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Dockerfile

  •

  Artistic License 2.0

  •32•88•17•3•Updated Nov 1, 2025Nov 1, 2025

• OrganismDbi

  Public
  Software to enable the smooth interfacing of different database packages

  bioconductor-packagecore-package

  R

  •2•0•2•0•Updated Oct 31, 2025Oct 31, 2025

• ShortRead

  Public
  bioconductor-packagecore-package

  R

  •6•8•3•0•Updated Oct 31, 2025Oct 31, 2025

• BioC2026

  Public
  conference website for Bioconductor 2026

  CSS

  •

  MIT License

  •1•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •28•9•7•1•Updated Oct 31, 2025Oct 31, 2025

• ReleaseLaunch

  Public
  documentation and R scripts helpful for Bioconductor release

  R

  •1•0•3•0•Updated Oct 31, 2025Oct 31, 2025

• SparseArray

  Public
  High-performance sparse data representation and manipulation in R

  bioconductor-packagecore-packageu24ca289073

  C

  •3•10•4•0•Updated Oct 31, 2025Oct 31, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •13•11•56•4•Updated Oct 31, 2025Oct 31, 2025

• Biostrings

  Public
  Efficient manipulation of biological strings

  bioconductor-packagecore-package

  R

  •17•65•18•3•Updated Oct 31, 2025Oct 31, 2025

• txdbmaker

  Public
  A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

  bioconductor-packagecore-package

  R

  •1•3•7•0•Updated Oct 31, 2025Oct 31, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •43•32•16•11•Updated Oct 30, 2025Oct 30, 2025

• SummarizedExperiment

  Public
  A container (S4 class) for matrix-like assays

  bioconductor-packagecore-package

  R

  •9•36•25•0•Updated Oct 30, 2025Oct 30, 2025

• VariantAnnotation

  Public
  Annotation of Genetic Variants

  bioconductor-packagecore-package

  R

  •20•29•33•2•Updated Oct 30, 2025Oct 30, 2025

• h5mread

  Public
  A fast HDF5 reader

  u24ca289073

  C

  •0•1•1•0•Updated Oct 30, 2025Oct 30, 2025

• pwalign

  Public
  Perform pairwise sequence alignments

  bioconductor-package

  R

  •2•1•9•0•Updated Oct 30, 2025Oct 30, 2025

• UCSC.utils

  Public
  Low-level utilities to retrieve data from the UCSC Genome Browser

  bioconductor-packagecore-package

  R

  •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

• AnVILBase

  Public
  u24hg010263

  R

  •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• AnVILGCP

  Public
  Functionality for the AnVIL platform using GCP

  u24hg010263

  R

  •0•0•1•0•Updated Oct 30, 2025Oct 30, 2025

• AnVILAz

  Public
  R / Bioconductor Support for the AnVIL Azure Platform

  u24hg010263

  R

  •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• BSgenomeForge

  Public

  Bioconductor/BSgenomeForge’s past year of commit activity
  Forge your own BSgenome data package

  bioconductor-packagecore-package

  R

  •3•5•5•0•Updated Oct 30, 2025Oct 30, 2025

• BiocBaseUtils

  Public

  Bioconductor/BiocBaseUtils’s past year of commit activity
  bioconductor-packagecore-package

  R

  •1•4•1•0•Updated Oct 30, 2025Oct 30, 2025

• BiocHubsShiny

  Public
  R

  •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• updateObject

  Public

  Bioconductor/updateObject’s past year of commit activity
  Find/fix old serialized S4 instances

  bioconductor-packagecore-package

  R

  •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

• S4Arrays

  Public
  Foundation of array-like containers in Bioconductor

  bioconductor-packagecore-packageu24ca289073

  R

  •3•7•1•0•Updated Oct 30, 2025Oct 30, 2025

• HubPub

  Public
  bioconductor-package

  R

  •4•3•4•1•Updated Oct 30, 2025Oct 30, 2025

• AnVILPublish

  Public
  u24hg010263

  R

  •6•0•6•2•Updated Oct 30, 2025Oct 30, 2025

• BiocIO

  Public
  Standard input / output framework for use by Bioconductor packages

  bioconductor-packagecore-package

  R

  •0•1•1•0•Updated Oct 30, 2025Oct 30, 2025