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@DynamicsAndNeuralSystems The Dynamics and Neural Systems Group, The University of Sydney

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    25 repositories

    • catch22

      Public
      catch22: CAnonical Time-series CHaracteristics
      time-seriesfeature-extractiontime-series-analysis
      C
      •
      GNU General Public License v3.0
      •73•448•13•1•Updated Dec 7, 2025Dec 7, 2025

    • Time-reversibility

      Public
      Code and data to reproduce Dalle Nogare and Fulcher "A data-driven approach to identifying statistical indicators of temporal asymmetry"
      Jupyter Notebook
      •0•2•0•0•Updated Nov 19, 2025Nov 19, 2025

    • sync_osc_MSTMs

      Public
      Mirror of hctsa repo for spike trains (https://github.com/GNB-UAM/sync_osc_MSTMs). Code used for the article "Synchrony, oscillations, and phase relationships in collective neuronal activity: a highly-comparative overview of methods" by F. Baroni and B.D. Fulcher (2025) PLOS Computational Biology 21 (10): e1013597.
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • pyhctsa

      Public
      The most comprehensive time-series feature extraction package in python.
      HTML
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Sep 28, 2025Sep 28, 2025

    • feature-mediated-dependency-detection

      Public
      A method for detecting pairwise dependence based on feature-based adaption of information theoretic metrics
      R
      •1•1•0•0•Updated Sep 24, 2025Sep 24, 2025

    • pyspi

      Public
      Comparative analysis of pairwise interactions in multivariate time series.
      time-seriescomplex-networkscomplex-systemsmultivariate-analysistime-series-analysismultivariate-timeseriespairwise-interactions
      Python
      •
      GNU General Public License v3.0
      •31•249•8•2•Updated Sep 17, 2025Sep 17, 2025

    • DynamicsAndNeuralSystems.github.io

      Public
      SCSS
      •1.3k•0•0•0•Updated Sep 15, 2025Sep 15, 2025

    • pycatch22

      Public
      python implementation of catch22
      C
      •
      GNU General Public License v3.0
      •17•88•3•2•Updated Aug 1, 2025Aug 1, 2025

    • catchaMouse16

      Public
      catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI
      time-series-analysisfmri-analysismouse-fmri
      C
      •
      GNU General Public License v3.0
      •3•17•0•1•Updated Jul 15, 2025Jul 15, 2025

    • Homotopic_FC_HCP

      Public
      All code and intermediate data to reproduce results in our preprint, 'Mapping functional, structural, and molecular correlates of homotopic connectivity'
      Jupyter Notebook
      •0•1•0•0•Updated Jun 26, 2025Jun 26, 2025

    • geometricFNPmodel

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 24, 2025Jun 24, 2025

    • OverlappingCommunityDetection_HCP

      Public
      This repository contains all code needed to reproduce analyses and visuals presented in our preprint, Benchmarking overlapping community detection methods for applications in human connectomics.
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • Catchamouse16_paper_code

      Public
      Compute set of important operations for HCTSA code
      MATLAB
      •12•0•0•0•Updated May 5, 2025May 5, 2025

    • OverlappingCommunityDetection

      Public
      Comparing overlapping community detection algorithms on structural brain networks.
      C++
      •0•2•1•0•Updated Apr 2, 2025Apr 2, 2025

    • fMRI_FeaturesDisorders

      Public
      Code and data to reproduce Bryant et al. 2024 preprint "Extracting interpretable signatures of whole-brain dynamics through systematic comparison"
      Jupyter Notebook
      •2•7•0•0•Updated Mar 26, 2025Mar 26, 2025

    • pinup_paper

      Public
      Code to reproduce figure 3 of the PINUP paper
      Jupyter Notebook
      •1•6•0•0•Updated Jul 11, 2024Jul 11, 2024

    • RAD

      Public
      Code for RAD in your favourite language
      Python
      •
      MIT License
      •0•3•0•0•Updated Jul 5, 2024Jul 5, 2024

    • pyspi-distribute

      Public
      Simple scripts for submitting multiple parallel jobs to a HPC (using PBS)
      Python
      •2•0•0•0•Updated Feb 16, 2024Feb 16, 2024

    • pyspi_tmp

      Public archive
      Comparative analysis of pairwise interactions in multivariate time series.
      Python
      •
      GNU General Public License v3.0
      •31•13•0•1•Updated Nov 12, 2023Nov 12, 2023

    • pyspi_paper_code

      Public
      All code to download datasets for the three classification case studies, compute SPIs, fit SVMs, and visualise results for pyspi publication
      HTML
      •1•12•0•0•Updated Aug 14, 2023Aug 14, 2023

    • MouseBrainModelling

      Public
      Honours Project
      Jupyter Notebook
      •4•1•0•0•Updated Apr 8, 2022Apr 8, 2022

    • Comp-Engine-Features

      Public
      Python
      •
      GNU General Public License v3.0
      •1•2•1•1•Updated Aug 23, 2021Aug 23, 2021

    • humanStructureFunction

      Public
      Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP
      connectomicstime-series-analysisneuroimaging-analysis
      MATLAB
      •3•5•0•0•Updated Aug 11, 2021Aug 11, 2021

    • DevelopingMouse

      Public
      MATLAB
      •0•2•0•0•Updated Mar 19, 2021Mar 19, 2021

    • DevelopmentalExpressionModeling

      Public
      MATLAB
      •0•1•0•0•Updated Jul 29, 2020Jul 29, 2020