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    31 repositories

    • figure_tips

      Public
      Tips for publication-ready figures
      0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • thunder

      Public
      [NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark
      benchmarkdeep-learningdigital-pathologyhistopathologyfoundation-models
      Python
      •
      Creative Commons Attribution 4.0 International
      •6•21•1•0•Updated Oct 30, 2025Oct 30, 2025

    • novae

      Public
      Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•59•6•0•Updated Oct 28, 2025Oct 28, 2025

    • lincs

      Public
      Learn and Infer Non Compensatory Sortings
      C++
      •
      GNU Lesser General Public License v3.0
      •2•3•6•1•Updated Oct 14, 2025Oct 14, 2025

    • STHELAR

      Public
      A multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation
      Jupyter Notebook
      •0•6•0•0•Updated Sep 9, 2025Sep 9, 2025

    • HistAug

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•9•0•0•Updated Aug 27, 2025Aug 27, 2025

    • CellViT_for_STHELAR

      Public
      Code from the CellViT repository and adapted to build STHELAR dataset
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jul 17, 2025Jul 17, 2025

    • novae_benchmark

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Feb 27, 2025Feb 27, 2025

    • pelc

      Public
      Python Eplet Load Calculator
      pythonhlaepletsepitopes
      Python
      •0•4•0•0•Updated Feb 21, 2025Feb 21, 2025

    • orra-dm-2024-25

      Public
      Practical Work for the Decision Making class at CentraleSupélec
      Python
      •4•1•0•0•Updated Jan 17, 2025Jan 17, 2025

    • Enigmas-Xmas2024

      Public
      A series of enigmas for the lab 2024 Xmas event.
      TeX
      •0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

    • scyan

      Public
      Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
      deep-learninggenerative-modelcytometrynormalizing-flowssingle-cell-omics
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•38•2•0•Updated Nov 22, 2024Nov 22, 2024

    • learning-heterogeneous-preferences

      Public
      Companion repository for the paper "Learning multiple multicriteria additive models from heterogeneous preferences" (ADT 2024).
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • PresentationJuin2023PRFD

      Public
      A small presentation of my PhD project to the MICS lab.
      0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • s4_digital_pathology

      Public
      Python
      •1•24•2•0•Updated Jul 16, 2024Jul 16, 2024

    • .github

      Public
      Repo that hosts the organization README.
      0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • choice-learn

      Public
      Large-scale choice modeling in Python !
      Python
      •
      MIT License
      •9•0•0•0•Updated Jul 5, 2024Jul 5, 2024

    • Enigmas-Summer2024

      Public
      A series of enigmas for the high school students interns during lab 2024 summer event.
      JavaScript
      •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • Enigmas-Xmas2023

      Public
      TeX
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • DeepLearningCourse2024

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Mar 27, 2024Mar 27, 2024

    • Enigmas-Xmas2022

      Public
      A series of enigmas for the lab 2022 Xmas event.
      TeX
      •0•0•0•0•Updated Jan 7, 2024Jan 7, 2024

    • deadlines

      Public
      ⏰ Main conference deadlines for the MICS lab.
      JavaScript
      •
      MIT License
      •1k•3•0•0•Updated Dec 18, 2023Dec 18, 2023

    • XmasPresentation2023PRFD

      Public
      X-mas Presentation 2023 by PRFD.
      Jupyter Notebook
      •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • pard

      Public
      Physicochemical Amino acid Replacement Distances (PARD)
      pythonaminoacidepsteingranthamsneath
      Python
      •1•9•0•0•Updated Oct 8, 2023Oct 8, 2023

    • DrawClass

      Public
      A small app to draw images of given classes.
      HTML
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • scyan_data

      Public
      Auxiliary repository to store public cytometry datasets and Scyan tables.
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • poetry_cookiecutter

      Public
      Template for data science projects using PyPoetry to ease packaging. It includes testing, a documentation, formatting, and fast deployment on PyPI.
      pythoncookiecutter
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jul 9, 2023Jul 9, 2023

    • CustOmics

      Public
      A deep-learning framework for multi-omics integration
      Jupyter Notebook
      •
      MIT License
      •8•1•0•0•Updated Mar 8, 2023Mar 8, 2023

    • Labelize

      Public
      A small app to labelize images from a folder.
      Python
      •0•0•0•0•Updated Jan 9, 2023Jan 9, 2023

    • Hyper-adaC

      Public
      Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis
      Python
      •
      MIT License
      •3•0•0•0•Updated Nov 28, 2022Nov 28, 2022