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    95 repositories

    • BioPlexPy

      Public
      Python-side access to PPI data from Gygi lab
      Jupyter Notebook
      •
      MIT License
      •1•3•4•1•Updated Oct 31, 2025Oct 31, 2025

    • scDiagnostics

      Public
      Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data
      R
      •2•9•7•0•Updated Oct 29, 2025Oct 29, 2025

    • computervision

      Public
      The CCB Computer Vision Repository
      machine-learningcomputer-visiondeep-learningneural-networks
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • git_backed_test

      Public
      0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • LLMTools-HMS

      Public
      A repository for getting started with LLM resources at Harvard Medical School
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • ISL_ch5_resampling_python_lab

      Public
      Lab portion of the ISL ch5 with configuration for codespaces
      Jupyter Notebook
      •0•0•1•0•Updated Oct 21, 2025Oct 21, 2025

    • ProteinGymPy

      Public
      Programmatic access to ProteinGym datasets in Python
      Python
      •
      Creative Commons Attribution 4.0 International
      •0•0•3•0•Updated Oct 21, 2025Oct 21, 2025

    • AlphaMissenseR

      Public
      Accessing AlphaMissense Data Resources in R
      R
      •3•0•2•0•Updated Oct 12, 2025Oct 12, 2025

    • immunology-bootcamp-2023

      Public
      Materials for Systems Immunology R Bootcamp Fall 2023
      HTML
      •
      Other
      •1•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • ProteinGymR

      Public
      Programmatic access to ProteinGym datasets in R/Bioconductor
      R
      •0•0•2•0•Updated Oct 6, 2025Oct 6, 2025

    • missing_data

      Public
      Missing data workshop
      R
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • cadence

      Public
      A project for creating meeting schedules.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • BioPlex_abundance_Shiny

      Public
      Shiny App for protein and PTM abundance analysis
      R
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • MerfishData

      Public
      Collection of public MERFISH datasets
      R
      •2•1•2•0•Updated Jul 13, 2025Jul 13, 2025

    • HarvardInovalonUserGuide

      Public
      User guide for Harvard's Inovalon resources.
      R
      •
      MIT License
      •2•6•0•0•Updated Jul 11, 2025Jul 11, 2025

    • scDiagnosticsApp

      Public
      Shiny app for scDiagnostics
      R
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • ccbfold

      Public
      AlphaFold3 workshop
      Python
      •
      Other
      •0•2•0•0•Updated May 22, 2025May 22, 2025

    • af3_workshop_exercise_05_visualizing_interpreting

      Public
      jupyterlite version of exercise 5 of the AlphaFold3 workshop
      Jupyter Notebook
      •0•0•2•0•Updated May 12, 2025May 12, 2025

    • visualization_demo

      Public
      demo from ccbfold exercise 05 that is hosted in browser
      Jupyter Notebook
      •0•0•0•0•Updated May 9, 2025May 9, 2025

    • AutomaticSpeechRecognition

      Public
      Examples to help you get up and running with locally-hosted ASR models.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • af3

      Public
      Biowulf alphhafold3 wrapper
      Python
      •
      Other
      •1•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • optimal-transport

      Public
      A compilation of notes, slides, references and code on the topic of optimal transport.
      R
      •0•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • alphafold3_tools

      Public
      Toolkit for alphafold3 input and output files
      Python
      •
      BSD 2-Clause "Simplified" License
      •10•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • workbench-python-workshop

      Public
      8-hour workshop introducing Python using The Carpentries new workbench template.
      Other
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • MouseAgingData

      Public
      Mouse aging multi-omics project with Rubin Lab
      R
      •0•1•1•0•Updated Nov 4, 2024Nov 4, 2024

    • Git-Backed-Content

      Public
      This tutorial demonstrates how to deploy a Shiny app on Posit Connect servers with pins to write and read data on Posit Connect.
      R
      •1•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • goslingr

      Public
      htmlwidget for gosling.js
      R
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • CyCIFData

      Public
      Collection of public CyCIF datasets
      R
      •
      MIT License
      •1•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • scCalibratoR

      Public
      scCalibratoR is an R/Bioconductor package designed to address challenges in single-cell RNA sequencing (scRNA-seq) analysis, including batch effect correction and annotation refinement.
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • periomodel

      Public
      Estimating Periodontal Stability Using Computer Vision
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024