cran check failure needing resubmission by Nov. 5

[simonpcouch]

Dear maintainer,

Please see the problems shown on
https://cran.r-project.org/web/checks/check_results_mcptools.html.

Please correct before 2025-11-05 to safely retain your package on CRAN.

The CRAN Team

Current status on that webpage:

Version: 0.1.1
Check: tests
Result: ERROR 
    Running ‘testthat.R’ [8s/39s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > # This file is part of the standard setup for testthat.
    > # It is recommended that you do not modify it.
    > #
    > # Where should you do additional test configuration?
    > # Learn more about the roles of various files in:
    > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
    > # * https://testthat.r-lib.org/articles/special-files.html
    > 
    > library(testthat)
    > library(mcptools)
    > 
    > test_check("mcptools")
    [ FAIL 2 | WARN 0 | SKIP 8 | PASS 54 ]
    
    ══ Skipped tests (8) ═══════════════════════════════════════════════════════════
    • On CRAN (7): 'test-client.R:60:3', 'test-client.R:66:3',
      'test-client.R:73:3', 'test-server.R:33:3', 'test-tools.R:19:3',
      'test-tools.R:49:3', 'test-utils.R:20:3'
    • identical(Sys.getenv("GITHUB_PAT"), "") is TRUE (1): 'test-client.R:3:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-server.R:23:3'): roundtrip mcp_server and mcp_tools ──────────
    all(c("list_r_sessions", "select_r_session") %in% tool_names) is not TRUE
    
    `actual`:   FALSE
    `expected`: TRUE 
    ── Error ('test-server.R:26:3'): roundtrip mcp_server and mcp_tools ────────────
    Error in `tools[[which(tool_names == "list_r_sessions")]]`: attempt to select less than one element in get1index
    
    [ FAIL 2 | WARN 0 | SKIP 8 | PASS 54 ]
    Error: Test failures
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Linux Fedora systems are the only one seeing this issue:

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.1	3.64	39.22	42.86	OK	
r-devel-linux-x86_64-debian-gcc	0.1.1	2.46	31.74	34.20	OK	
r-devel-linux-x86_64-fedora-clang	0.1.1	15.00	51.12	66.12	ERROR	
r-devel-linux-x86_64-fedora-gcc	0.1.1	30.00	51.50	81.50	ERROR	
r-devel-windows-x86_64	0.1.1	5.00	61.00	66.00	OK	
r-patched-linux-x86_64	0.1.1	2.89	36.42	39.31	OK	
r-release-linux-x86_64	0.1.1	3.34	35.98	39.32	OK	
r-release-macos-arm64	0.1.1	2.00	29.00	31.00	OK	
r-release-macos-x86_64	0.1.1	5.00	62.00	67.00	OK	
r-release-windows-x86_64	0.1.1	5.00	62.00	67.00	OK	
r-oldrel-macos-arm64	0.1.1	2.00	34.00	36.00	OK	
r-oldrel-macos-x86_64	0.1.1	3.00	57.00	60.00	OK	
r-oldrel-windows-x86_64	0.1.1	7.00	67.00	74.00	OK	
``