Support NumPy 2.0+ #98 - Initial Commit for toml and example script (#126)

This pull request includes several changes to improve compatibility and update dependencies across multiple files. The most important changes include adding version checks for dependencies, updating deprecation warnings, and modifying dependency versions in the `pyproject.toml` file.

### Dependency Management:

* [`examples/boltzmann_wealth/performance_plot.py`](diffhunk://#diff-0cfe707eefb955b4435c5773abfc2634593774e785fe9b83e2d0d94368d273cfR46-R49): Added version checks to ensure the installed version of `mesa` meets the required version before creating agents.

### Deprecation Warnings:

* [`mesa_frames/concrete/pandas/agentset.py`](diffhunk://#diff-e72d1839a96ddb5155de9001c1d833e30d9c811a3f2e1ca98ea12fd946f5f8b0L76-R80): Reformatted the deprecation warning for `AgentSetPandas` to improve readability.
* [`mesa_frames/concrete/pandas/mixin.py`](diffhunk://#diff-f5cb777b3360f5469015a37672c054eabb7c455d8aeddccd574cefb1e4c8fc72L54-R59): Reformatted the deprecation warning for `PandasMixin` to improve readability.

### Dependency Updates:

* [`pyproject.toml`](diffhunk://#diff-50c86b7ed8ac2cf95bd48334961bf0530cdc77b5a56f852c5c61b89d735fd711L36-R36): Updated the version requirement for `numpy` to `>=2.0.2`.
* [`pyproject.toml`](diffhunk://#diff-50c86b7ed8ac2cf95bd48334961bf0530cdc77b5a56f852c5c61b89d735fd711L92-R92): Updated the version requirement for `numba` to `>=0.60`.


* Initial Commit for toml and example script

This commit includes changes in toml file to update numpy verstion to 2.0.2 and using numba latest

along with changes in performance_plot.py to use custom modal and agent for testing

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Initial Commit for toml and example script

This commit includes changes in toml file to update numpy verstion to 2.0.2 and using numba latest

along with changes in performance_plot.py to use custom modal and agent for testing

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Updated performance_plot to fix plots

Changes are done to fix performance plot data, default anent cannot set if version >=2.4.0 so removed manual agent additon and added version verification to run defaut agents in case of version >= 2.4.0

Also adding sample performance plots generted with latest changes

* Updated performance_plot to fix plots

Changes are done to fix performance plot data, default anent cannot set if version >=2.4.0 so removed manual agent additon and added version verification to run defaut agents in case of version >= 2.4.0

Also adding sample performance plots generted with latest changes

* Update mesa_frames/concrete/pandas/agentset.py

updating suggested code to pass pre-commit check

Co-authored-by: Adam Amer <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update pyproject.toml

Co-authored-by: Adam Amer <[email protected]>

* Update mesa_frames/concrete/pandas/mixin.py

updating suggested code to pass pre-commit check

Co-authored-by: Adam Amer <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* setting numba to be >= 0.60.0

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Adam Amer <[email protected]>

Author: 3 people

examples/boltzmann_wealth/boltzmann_no_mesa.png

@@ -5,6 +5,8 @@
 import perfplot
 import polars as pl
 import seaborn as sns
+import importlib.metadata
+from packaging import version
 
 from mesa_frames import AgentSetPandas, AgentSetPolars, ModelDF
 
@@ -41,7 +43,11 @@ def __init__(self, N):
         super().__init__()
         self.num_agents = N
         # Create scheduler and assign it to the model
-        self.agents = [MoneyAgent(i, self) for i in range(self.num_agents)]
+        installed_version = version.parse(importlib.metadata.version("mesa"))
+        required_version = version.parse("2.4.0")
+
+        if installed_version < required_version:
+            self.agents = [MoneyAgent(i, self) for i in range(self.num_agents)]
 
     def step(self):
         """Advance the model by one step."""

examples/boltzmann_wealth/boltzmann_with_mesa.png

@@ -73,9 +73,11 @@ def step(self):
 
 @copydoc(AgentSetDF)
 class AgentSetPandas(AgentSetDF, PandasMixin):
-    """WARNING: AgentSetPandas is deprecated and will be removed in the next release of mesa-frames.
+    """
+    WARNING: AgentSetPandas is deprecated and will be removed in the next release of mesa-frames.
 
     pandas-based implementation of AgentSetDF.
+
     """
 
     _agents: pd.DataFrame

examples/boltzmann_wealth/performance_plot.py

@@ -51,9 +51,12 @@ def _some_private_method(self):
 
 
 class PandasMixin(DataFrameMixin):
-    """WARNING: PandasMixin is deprecated and will be removed in the next release of mesa-frames.
+    """
+    WARNING: PandasMixin is deprecated and will be removed in the next release of mesa-frames.
+
     pandas-based implementation of DataFrame operations.
-    """  # noqa: D205
+
+    """
 
     def __init__(self, *args, **kwargs):
         warnings.warn(

mesa_frames/concrete/pandas/agentset.py

@@ -33,7 +33,7 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Artificial Life",
 ]
 dependencies = [
-  "numpy~=1.26",
+  "numpy>=2.0.2",
   "typing-extensions>=4.9", #typing-extensions.Self added in 4.9
   ## pandas
   "pandas>=2.2",
@@ -89,7 +89,7 @@ test = [
 dev = [
   "mesa_frames[test, docs]",
   "mesa~=2.4.0",
-  "numba",
+  "numba>=0.60",
 ]
 
 [tool.hatch.envs.test]