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Merge dev to master #391

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@MKoesters MKoesters commented Nov 28, 2025

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vgp57214_gsk and others added 30 commits March 15, 2024 11:23
sphinx to gh workflow
5d2758c
sphinx to gh workflow
bca50f7
sphinx to gh workflow
5131a2f
sphinx to gh workflow
104470c
sphinx to gh workflow
455862b
sphinx to gh workflow
bfefbe0
sphinx to gh workflow
9173a19
sphinx to gh workflow
b78934b
@renovate
Update dependency numpydoc to v1.7.0
29f05cc
@MKoesters
Merge pull request #355 from valentin-petzold/feature/sphinx_docu_to_…
085f005 
…pages

sphinx to gh workflow
@fu
Update version.txt
697221a
@StSchulze
Merge pull request #356 from pymzml/renovate/numpydoc-1.x
744aae7 
Update dependency numpydoc to v1.7.0
@fu
Merge pull request #359 from pymzml/rc/2.5.8
f5552ee 
Update version.txt
@MKoesters
Update sphinx.yml
7da5931
@MKoesters
Merge pull request #360 from pymzml/MKoesters-patch-1
9c021a1 
Update sphinx.yml
Release v2.5.8
bba07f9
@MKoesters
Update sphinx.yml
25ed269
@MKoesters
Update version.txt
b594e6d
@StSchulze
Merge pull request #361 from pymzml/MKoesters-patch-1
c616bbf 
Update sphinx.yml
test docu
ca25974
test docu
022f0fe
test docu
4c1de2b
test docu
e278f5a
@wolfgangcolsman
Fix: AttributeError: 'NoneType' object has no attribute 'attrib'
a14f98b
@wolfgangcolsman
Fix: AttributeError: 'NoneType' object has no attribute 'attrib'
a51022b
@tristan-ranff
Merge pull request #364 from pymzml/fix/docu_pages
d74fef7 
test docu
@tristan-ranff
Merge pull request #365 from zontal/bug/NoneType
95e1f14 
Bug/none type
@tristan-ranff
Update version.txt
cb8a479
Save GSGW test output file to example_data
428329d 
- example data for GSGW is saved to example_data and clean up is attempted
@MKoesters
Update README.rst
ee429db
fu and others added 22 commits March 28, 2025 14:05
@fu
Merge pull request #376 from pymzml/feature/move_to_pyproject_toml
f3542b5 
move to pyproject.toml
@fu
Merge pull request #378 from pymzml/renovate/python-3.x
40cbdd6 
Update dependency python to 3.13
Blackin diz
a66a9c9
@StSchulze
Merge pull request #379 from pymzml/feature/chromatogram_access
b0c9cf1 
Addition of features to handle chromatograms
@renovate
Update dependency numpydoc to v1.9.0
102a3e3
@renovate
Update actions/checkout action to v5
3d0cbb2
@rileymcdowell
Fix SyntaxWarnings on mzml regex strings (#384)
e1fb303
@MKoesters
Please SonarQube
1f132a0
@MKoesters
remove unnecesarry list cal
e808dc9
@MKoesters
Please SonarQube
8683b2f 
Please SonarQube
@MKoesters
Merge pull request #381 from pymzml/renovate/actions-checkout-5.x
1a1383a 
Update actions/checkout action to v5
@MKoesters
Merge pull request #368 from pymzml/renovate/numpydoc-1.x
f01c6f7 
Update dependency numpydoc to v1.9.0
@MKoesters
Merge pull request #385 from corteva/syntax_warning_fix_issue_384
7128af1 
Fix SyntaxWarnings on mzml regex strings (#384)
@renovate
Update actions/setup-python action to v6
b8ef6e9
@MKoesters
Adress #387
f4a4411 
- enable unused obo test
- fix name of obo file
- download missing obo 4.1.79
@MKoesters
remove debug print function
dc7ae79
@renovate
Update actions/checkout action to v6
4d40b36
@MKoesters
Convert offset to integer in standardMzml.py
3e540fa
@MKoesters
Merge pull request #388 from pymzml/fix/obo_tests
d6de0b1 
Adress #387
@MKoesters
Merge pull request #390 from pymzml/feature/regex_index_type_error
b1acb0e 
Convert offset to integer while building offset dict with index_regex
@MKoesters
Merge pull request #389 from pymzml/renovate/actions-checkout-6.x
1a8b398 
Update actions/checkout action to v6
@MKoesters
Merge pull request #383 from pymzml/renovate/actions-setup-python-6.x
06ddc76 
Update actions/setup-python action to v6
@MKoesters MKoesters requested review from StSchulze and fu November 28, 2025 15:15
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sonarqubecloud bot commented Dec 5, 2025

Quality Gate Failed Quality Gate failed

Failed conditions
19.7% Duplication on New Code (required ≤ 3%)

See analysis details on SonarQube Cloud

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@StSchulze StSchulze StSchulze approved these changes

@fu fu Awaiting requested review from fu

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8 participants

@MKoesters @StSchulze @fu @wolfgangcolsman @tristan-ranff @rkjulian @rileymcdowell