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Can't compile with GCC 15.2.1 20260209 #256

@virginiakheinen

Description

@virginiakheinen

I'm on Arch Linux 6.12.69-1-lts, R version 4.5.2. Later fails to compile with the latest release of GCC (15.2.1 20260209) installed:

> install.packages("~/Builds/later_1.4.6.tar.gz", repos = NULL, type = "source")
Installing package into ‘/home/me/R/x86_64-pc-linux-gnu-library/4.5’
(as ‘lib’ is unspecified)
* installing *source* package ‘later’ ...
** this is package ‘later’ version ‘1.4.6’
** package ‘later’ successfully unpacked and MD5 sums checked
** using staged installation
Running configure script
-latomic linker flag not needed.
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260209’
using C++ compiler: ‘g++ (GCC) 15.2.1 20260209’
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c callback_registry.cpp -o callback_registry.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c debug.cpp -o debug.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c fd.cpp -o fd.o
gcc -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects  -c init.c -o init.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c later.cpp -o later.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c later_posix.cpp -o later_posix.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c later_win32.cpp -o later_win32.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c timer_posix.cpp -o timer_posix.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c timestamp_unix.cpp -o timestamp_unix.o
g++ -std=gnu++17 -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wp,-D_GLIBCXX_ASSERTIONS -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects   -c timestamp_win32.cpp -o timestamp_win32.o
gcc -I"/usr/include/R/" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES  -I'/home/me/R/x86_64-pc-linux-gnu-library/4.5/Rcpp/include' -I/usr/local/include    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions         -Wp,-D_FORTIFY_SOURCE=3 -Wformat -Werror=format-security         -fstack-clash-protection -fcf-protection         -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -g -ffile-prefix-map=/build/r/src=/usr/src/debug/r -flto=auto -ffat-lto-objects  -c tinycthread.c -o tinycthread.o
In file included from tinycthread.c:25:
tinycthread.h:471:21: error: conflicting types for ‘pthread_once_t’; have ‘__once_flag’
  471 |   #define once_flag pthread_once_t
      |                     ^~~~~~~~~~~~~~
In file included from /usr/include/pthread.h:26,
                 from tinycthread.h:98:
/usr/include/bits/pthreadtypes.h:53:30: note: previous declaration of ‘pthread_once_t’ with type ‘pthread_once_t’ {aka ‘int’}
   53 | typedef int __ONCE_ALIGNMENT pthread_once_t;
      |                              ^~~~~~~~~~~~~~
make: *** [/usr/lib64/R/etc/Makeconf:202: tinycthread.o] Error 1
ERROR: compilation failed for package ‘later’
* removing ‘/home/me/R/x86_64-pc-linux-gnu-library/4.5/later’
Warning message:
In utils::install.packages("~/Builds/later_1.4.6.tar.gz", repos = NULL,  :
  installation of package ‘/home/me/Builds/later_1.4.6.tar.gz’ had non-zero exit status

It also fails when installing from from CRAN (and it failed when CRAN had 1.4.5 too).

I downgraded to GCC 15.2.1 20260103, and then it compiled just fine. Probably not a huge impact for most people, but wanted to point it out!

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