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I noticed some numerical instabilities in the BEM coefficients for the WaveBot and frequencies >0.9 Hz. Refining the mesh didn't solve this.

Those are issues well-known to BEM solvers. We might want to address this in the post-porcessing?
The authors in the following suggest some post-processing techniques and have implemented them in an open-source tool BEMRosetta , written in C++.
https://www.researchgate.net/publication/355198128_A_post-processing_technique_for_addressing_%27irregular_frequencies%27_and_other_issues_in_the_results_from_BEM_solvers
Me might have some function for our users that detect and interpolate the irregular frequencies as well.
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