diff --git a/quay.io/biocontainers/pcdl/container.yaml b/quay.io/biocontainers/pcdl/container.yaml
new file mode 100644
index 0000000000000..a3312dff640f5
--- /dev/null
+++ b/quay.io/biocontainers/pcdl/container.yaml
@@ -0,0 +1,96 @@
+url: https://biocontainers.pro/tools/pcdl
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for pcdl
+latest:
+  3.3.6--pyhdfd78af_0: sha256:19189b0d49e7696f43fdebc40d101d207dacf29fa710308ad19d8073249d1950
+tags:
+  3.3.6--pyhdfd78af_0: sha256:19189b0d49e7696f43fdebc40d101d207dacf29fa710308ad19d8073249d1950
+docker: quay.io/biocontainers/pcdl
+aliases:
+  androiddeployqt6: /usr/local/bin/androiddeployqt6
+  assistant6: /usr/local/bin/assistant6
+  cllayerinfo: /usr/local/bin/cllayerinfo
+  dec265: /usr/local/bin/dec265
+  designer6: /usr/local/bin/designer6
+  dot_sandbox: /usr/local/bin/dot_sandbox
+  ffplay: /usr/local/bin/ffplay
+  gtk-builder-tool: /usr/local/bin/gtk-builder-tool
+  gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg
+  gtk-launch: /usr/local/bin/gtk-launch
+  gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0
+  gtk-query-settings: /usr/local/bin/gtk-query-settings
+  linguist6: /usr/local/bin/linguist6
+  pax11publish: /usr/local/bin/pax11publish
+  pcdl_get_anndata: /usr/local/bin/pcdl_get_anndata
+  pcdl_get_cell_attribute: /usr/local/bin/pcdl_get_cell_attribute
+  pcdl_get_cell_attribute_list: /usr/local/bin/pcdl_get_cell_attribute_list
+  pcdl_get_cell_df: /usr/local/bin/pcdl_get_cell_df
+  pcdl_get_celltype_list: /usr/local/bin/pcdl_get_celltype_list
+  pcdl_get_conc_attribute: /usr/local/bin/pcdl_get_conc_attribute
+  pcdl_get_conc_df: /usr/local/bin/pcdl_get_conc_df
+  pcdl_get_substrate_list: /usr/local/bin/pcdl_get_substrate_list
+  pcdl_get_unit_dict: /usr/local/bin/pcdl_get_unit_dict
+  pcdl_get_version: /usr/local/bin/pcdl_get_version
+  pcdl_make_cell_vtk: /usr/local/bin/pcdl_make_cell_vtk
+  pcdl_make_conc_vtk: /usr/local/bin/pcdl_make_conc_vtk
+  pcdl_make_gif: /usr/local/bin/pcdl_make_gif
+  pcdl_make_graph_gml: /usr/local/bin/pcdl_make_graph_gml
+  pcdl_make_movie: /usr/local/bin/pcdl_make_movie
+  pcdl_plot_contour: /usr/local/bin/pcdl_plot_contour
+  pcdl_plot_scatter: /usr/local/bin/pcdl_plot_scatter
+  pcdl_plot_timeseries: /usr/local/bin/pcdl_plot_timeseries
+  pixeltool6: /usr/local/bin/pixeltool6
+  protoc-29.3.0: /usr/local/bin/protoc-29.3.0
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upb-29.3.0: /usr/local/bin/protoc-gen-upb-29.3.0
+  protoc-gen-upb_minitable: /usr/local/bin/protoc-gen-upb_minitable
+  protoc-gen-upb_minitable-29.3.0: /usr/local/bin/protoc-gen-upb_minitable-29.3.0
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  protoc-gen-upbdefs-29.3.0: /usr/local/bin/protoc-gen-upbdefs-29.3.0
+  qdbus6: /usr/local/bin/qdbus6
+  qdbusviewer6: /usr/local/bin/qdbusviewer6
+  qdistancefieldgenerator6: /usr/local/bin/qdistancefieldgenerator6
+  qdoc6: /usr/local/bin/qdoc6
+  qmake6: /usr/local/bin/qmake6
+  qml6: /usr/local/bin/qml6
+  qmleasing6: /usr/local/bin/qmleasing6
+  qmlls6: /usr/local/bin/qmlls6
+  qmlpreview6: /usr/local/bin/qmlpreview6
+  qmlscene6: /usr/local/bin/qmlscene6
+  qt6.conf: /usr/local/bin/qt6.conf
+  qtdiag6: /usr/local/bin/qtdiag6
+  qtplugininfo6: /usr/local/bin/qtplugininfo6
+  sdl2-config: /usr/local/bin/sdl2-config
+  vtkParseJava-9.4: /usr/local/bin/vtkParseJava-9.4
+  vtkProbeOpenGLVersion-9.4: /usr/local/bin/vtkProbeOpenGLVersion-9.4
+  vtkWrapHierarchy-9.4: /usr/local/bin/vtkWrapHierarchy-9.4
+  vtkWrapJava-9.4: /usr/local/bin/vtkWrapJava-9.4
+  vtkWrapPython-9.4: /usr/local/bin/vtkWrapPython-9.4
+  vtkWrapPythonInit-9.4: /usr/local/bin/vtkWrapPythonInit-9.4
+  vtkWrapSerDes-9.4: /usr/local/bin/vtkWrapSerDes-9.4
+  vtkpython: /usr/local/bin/vtkpython
+  ldapadd: /usr/local/bin/ldapadd
+  ldapcompare: /usr/local/bin/ldapcompare
+  ldapdelete: /usr/local/bin/ldapdelete
+  ldapexop: /usr/local/bin/ldapexop
+  ldapmodify: /usr/local/bin/ldapmodify
+  ldapmodrdn: /usr/local/bin/ldapmodrdn
+  ldappasswd: /usr/local/bin/ldappasswd
+  ldapsearch: /usr/local/bin/ldapsearch
+  ldapurl: /usr/local/bin/ldapurl
+  ldapvc: /usr/local/bin/ldapvc
+  ldapwhoami: /usr/local/bin/ldapwhoami
+  vpxdec: /usr/local/bin/vpxdec
+  vpxenc: /usr/local/bin/vpxenc
+  wayland-scanner: /usr/local/bin/wayland-scanner
+  ffmpeg: /usr/local/bin/ffmpeg
+  ffprobe: /usr/local/bin/ffprobe
+  h264dec: /usr/local/bin/h264dec
+  h264enc: /usr/local/bin/h264enc
+  x264: /usr/local/bin/x264
+  x265: /usr/local/bin/x265
+  h5fuse: /usr/local/bin/h5fuse
+  SvtAv1EncApp: /usr/local/bin/SvtAv1EncApp
+  dav1d: /usr/local/bin/dav1d
+  aomdec: /usr/local/bin/aomdec
+  aomenc: /usr/local/bin/aomenc
diff --git a/quay.io/biocontainers/scxmatch/container.yaml b/quay.io/biocontainers/scxmatch/container.yaml
new file mode 100644
index 0000000000000..16b736614be63
--- /dev/null
+++ b/quay.io/biocontainers/scxmatch/container.yaml
@@ -0,0 +1,39 @@
+url: https://biocontainers.pro/tools/scxmatch
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for scxmatch
+latest:
+  0.0.2--pyhdfd78af_0: sha256:d0abdcf417ff12cd11545d7db4f1ac37ed42f5210d663033672cd62f8804a797
+tags:
+  0.0.2--pyhdfd78af_0: sha256:d0abdcf417ff12cd11545d7db4f1ac37ed42f5210d663033672cd62f8804a797
+docker: quay.io/biocontainers/scxmatch
+aliases:
+  gtk-builder-tool: /usr/local/bin/gtk-builder-tool
+  gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg
+  gtk-launch: /usr/local/bin/gtk-launch
+  gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0
+  gtk-query-settings: /usr/local/bin/gtk-query-settings
+  wayland-scanner: /usr/local/bin/wayland-scanner
+  h5fuse: /usr/local/bin/h5fuse
+  scanpy: /usr/local/bin/scanpy
+  qconvex: /usr/local/bin/qconvex
+  qdelaunay: /usr/local/bin/qdelaunay
+  qhalf: /usr/local/bin/qhalf
+  qhull: /usr/local/bin/qhull
+  qvoronoi: /usr/local/bin/qvoronoi
+  rbox: /usr/local/bin/rbox
+  idle3.13: /usr/local/bin/idle3.13
+  pydoc3.13: /usr/local/bin/pydoc3.13
+  python3.13: /usr/local/bin/python3.13
+  python3.13-config: /usr/local/bin/python3.13-config
+  xkbcli: /usr/local/bin/xkbcli
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
+  hwloc-diff: /usr/local/bin/hwloc-diff
+  hwloc-distrib: /usr/local/bin/hwloc-distrib
+  hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
+  hwloc-info: /usr/local/bin/hwloc-info
+  hwloc-ls: /usr/local/bin/hwloc-ls
+  hwloc-patch: /usr/local/bin/hwloc-patch
diff --git a/quay.io/biocontainers/sideretro/container.yaml b/quay.io/biocontainers/sideretro/container.yaml
new file mode 100644
index 0000000000000..1bffecafffdf2
--- /dev/null
+++ b/quay.io/biocontainers/sideretro/container.yaml
@@ -0,0 +1,14 @@
+url: https://biocontainers.pro/tools/sideretro
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for sideretro
+latest:
+  1.1.6--hb728cf0_0: sha256:00c63d8956c571250a1f0ef72eaecd7f41404f3e663284ae12f3af8fe6f1de98
+tags:
+  1.1.6--hb728cf0_0: sha256:00c63d8956c571250a1f0ef72eaecd7f41404f3e663284ae12f3af8fe6f1de98
+docker: quay.io/biocontainers/sideretro
+aliases:
+  sider: /usr/local/bin/sider
+  annot-tsv: /usr/local/bin/annot-tsv
+  htsfile: /usr/local/bin/htsfile
+  bgzip: /usr/local/bin/bgzip
+  tabix: /usr/local/bin/tabix
diff --git a/quay.io/biocontainers/soi/container.yaml b/quay.io/biocontainers/soi/container.yaml
new file mode 100644
index 0000000000000..f6b37fa1cc605
--- /dev/null
+++ b/quay.io/biocontainers/soi/container.yaml
@@ -0,0 +1,68 @@
+url: https://biocontainers.pro/tools/soi
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for soi
+latest:
+  1.2.3--pyhdfd78af_0: sha256:2c9961226c9bdd19c7cc6fadf635d8b40482e063e07c9b4daedb047f86044f81
+tags:
+  1.2.3--pyhdfd78af_0: sha256:2c9961226c9bdd19c7cc6fadf635d8b40482e063e07c9b4daedb047f86044f81
+docker: quay.io/biocontainers/soi
+aliases:
+  convert_orthofinder_tree_ids.py: /usr/local/bin/convert_orthofinder_tree_ids.py
+  make_ultrametric.py: /usr/local/bin/make_ultrametric.py
+  nw_clade: /usr/local/bin/nw_clade
+  nw_condense: /usr/local/bin/nw_condense
+  nw_display: /usr/local/bin/nw_display
+  nw_distance: /usr/local/bin/nw_distance
+  nw_duration: /usr/local/bin/nw_duration
+  nw_ed: /usr/local/bin/nw_ed
+  nw_gen: /usr/local/bin/nw_gen
+  nw_indent: /usr/local/bin/nw_indent
+  nw_labels: /usr/local/bin/nw_labels
+  nw_match: /usr/local/bin/nw_match
+  nw_order: /usr/local/bin/nw_order
+  nw_prune: /usr/local/bin/nw_prune
+  nw_rename: /usr/local/bin/nw_rename
+  nw_reroot: /usr/local/bin/nw_reroot
+  nw_stats: /usr/local/bin/nw_stats
+  nw_support: /usr/local/bin/nw_support
+  nw_topology: /usr/local/bin/nw_topology
+  nw_trim: /usr/local/bin/nw_trim
+  orthofinder: /usr/local/bin/orthofinder
+  pal2nal.pl: /usr/local/bin/pal2nal.pl
+  ppserver.py: /usr/local/bin/ppserver.py
+  primary_transcript.py: /usr/local/bin/primary_transcript.py
+  rcl: /usr/local/bin/rcl
+  rcl-dot-resmap.pl: /usr/local/bin/rcl-dot-resmap.pl
+  rcl-qc: /usr/local/bin/rcl-qc
+  rcl-qm.R: /usr/local/bin/rcl-qm.R
+  rcl-relevel.pl: /usr/local/bin/rcl-relevel.pl
+  rcl-select.pl: /usr/local/bin/rcl-select.pl
+  rcldo.pl: /usr/local/bin/rcldo.pl
+  soi: /usr/local/bin/soi
+  soi-orth: /usr/local/bin/soi-orth
+  soi-syn: /usr/local/bin/soi-syn
+  fastme: /usr/local/bin/fastme
+  gawk-5.3.1: /usr/local/bin/gawk-5.3.1
+  raxml-ng: /usr/local/bin/raxml-ng
+  raxml-ng-mpi: /usr/local/bin/raxml-ng-mpi
+  readal: /usr/local/bin/readal
+  statal: /usr/local/bin/statal
+  trimal: /usr/local/bin/trimal
+  iqtree2: /usr/local/bin/iqtree2
+  mclblastline: /usr/local/bin/mclblastline
+  mcxdeblast: /usr/local/bin/mcxdeblast
+  clm: /usr/local/bin/clm
+  clxdo: /usr/local/bin/clxdo
+  mcl: /usr/local/bin/mcl
+  mcx: /usr/local/bin/mcx
+  mcxarray: /usr/local/bin/mcxarray
+  mcxdump: /usr/local/bin/mcxdump
+  mcxi: /usr/local/bin/mcxi
+  mcxload: /usr/local/bin/mcxload
+  mcxmap: /usr/local/bin/mcxmap
+  mcxsubs: /usr/local/bin/mcxsubs
+  bsmp2info: /usr/local/bin/bsmp2info
+  fsa2xml: /usr/local/bin/fsa2xml
+  gbf2info: /usr/local/bin/gbf2info
+  just-top-hits: /usr/local/bin/just-top-hits
+  systematic-mutations: /usr/local/bin/systematic-mutations