Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 12 additions & 0 deletions quay.io/biocontainers/afwdist/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
url: https://biocontainers.pro/tools/afwdist
maintainer: '@vsoch'
description: singularity registry hpc automated addition for afwdist
latest:
1.0.0--h4349ce8_0:
sha256:fe1bc4878ba580700413c5cb1ce22a9c6aac3d1b8d2a9269bef03806369f7330
tags:
1.0.0--h4349ce8_0:
sha256:fe1bc4878ba580700413c5cb1ce22a9c6aac3d1b8d2a9269bef03806369f7330
docker: quay.io/biocontainers/afwdist
aliases:
afwdist: /usr/local/bin/afwdist
31 changes: 31 additions & 0 deletions quay.io/biocontainers/bioconductor-dreamlet/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,31 @@
url: https://biocontainers.pro/tools/bioconductor-dreamlet
maintainer: '@vsoch'
description: singularity registry hpc automated addition for
bioconductor-dreamlet
latest:
1.6.0--r44he5774e6_0:
sha256:42fccac4846794e2c92ddae811387f1e873a716ad9574d6b51594eb5219ec2d2
tags:
1.6.0--r44he5774e6_0:
sha256:42fccac4846794e2c92ddae811387f1e873a716ad9574d6b51594eb5219ec2d2
docker: quay.io/biocontainers/bioconductor-dreamlet
aliases:
x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
idle3.13: /usr/local/bin/idle3.13
pydoc3.13: /usr/local/bin/pydoc3.13
python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
numpy-config: /usr/local/bin/numpy-config
installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
yq: /usr/local/bin/yq
jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
activate-global-python-argcomplete:
/usr/local/bin/activate-global-python-argcomplete
python-argcomplete-check-easy-install-script:
/usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
hb-info: /usr/local/bin/hb-info
tjbench: /usr/local/bin/tjbench
85 changes: 85 additions & 0 deletions quay.io/biocontainers/ddprimer/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,85 @@
url: https://biocontainers.pro/tools/ddprimer
maintainer: '@vsoch'
description: singularity registry hpc automated addition for ddprimer
latest:
0.1.1--pyhdfd78af_0:
sha256:03be4be8de03a0d358191208c9d3b0f44322ebf44f42f19848afd98a9d6d1cdf
tags:
0.1.1--pyhdfd78af_0:
sha256:03be4be8de03a0d358191208c9d3b0f44322ebf44f42f19848afd98a9d6d1cdf
docker: quay.io/biocontainers/ddprimer
aliases:
RNAconsensus: /usr/local/bin/RNAconsensus
archive-nlmnlp: /usr/local/bin/archive-nlmnlp
archive-pids: /usr/local/bin/archive-pids
ddprimer: /usr/local/bin/ddprimer
download-flatfile: /usr/local/bin/download-flatfile
ecollect: /usr/local/bin/ecollect
gbf2facds: /usr/local/bin/gbf2facds
gbf2tbl: /usr/local/bin/gbf2tbl
gff-sort: /usr/local/bin/gff-sort
gff2gff: /usr/local/bin/gff2gff
gff2xml: /usr/local/bin/gff2xml
helpviewer: /usr/local/bin/helpviewer
img2png: /usr/local/bin/img2png
img2py: /usr/local/bin/img2py
img2xpm: /usr/local/bin/img2xpm
pair-at-a-time: /usr/local/bin/pair-at-a-time
print-missing-subranges: /usr/local/bin/print-missing-subranges
pycrust: /usr/local/bin/pycrust
pyshell: /usr/local/bin/pyshell
pyslices: /usr/local/bin/pyslices
pyslicesshell: /usr/local/bin/pyslicesshell
pywxrc: /usr/local/bin/pywxrc
roh-viz: /usr/local/bin/roh-viz
sort-by-length: /usr/local/bin/sort-by-length
spirv-as: /usr/local/bin/spirv-as
spirv-cfg: /usr/local/bin/spirv-cfg
spirv-dis: /usr/local/bin/spirv-dis
spirv-lesspipe.sh: /usr/local/bin/spirv-lesspipe.sh
spirv-link: /usr/local/bin/spirv-link
spirv-lint: /usr/local/bin/spirv-lint
spirv-objdump: /usr/local/bin/spirv-objdump
spirv-opt: /usr/local/bin/spirv-opt
spirv-reduce: /usr/local/bin/spirv-reduce
spirv-val: /usr/local/bin/spirv-val
vrfs-variances: /usr/local/bin/vrfs-variances
wx-config: /usr/local/bin/wx-config
wxdemo: /usr/local/bin/wxdemo
wxdocs: /usr/local/bin/wxdocs
wxget: /usr/local/bin/wxget
wxrc: /usr/local/bin/wxrc
wxrc-3.2: /usr/local/bin/wxrc-3.2
xcommon.sh: /usr/local/bin/xcommon.sh
xfetch: /usr/local/bin/xfetch
xfetch.ini: /usr/local/bin/xfetch.ini
xfilter: /usr/local/bin/xfilter
xinfo: /usr/local/bin/xinfo
xlink: /usr/local/bin/xlink
xlink.ini: /usr/local/bin/xlink.ini
xsearch: /usr/local/bin/xsearch
gtk-builder-tool: /usr/local/bin/gtk-builder-tool
gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg
gtk-launch: /usr/local/bin/gtk-launch
gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0
gtk-query-settings: /usr/local/bin/gtk-query-settings
ref-cache: /usr/local/bin/ref-cache
wayland-scanner: /usr/local/bin/wayland-scanner
RNAmultifold: /usr/local/bin/RNAmultifold
gi-compile-repository: /usr/local/bin/gi-compile-repository
gi-decompile-typelib: /usr/local/bin/gi-decompile-typelib
gi-inspect-typelib: /usr/local/bin/gi-inspect-typelib
bsmp2info: /usr/local/bin/bsmp2info
fsa2xml: /usr/local/bin/fsa2xml
gbf2info: /usr/local/bin/gbf2info
just-top-hits: /usr/local/bin/just-top-hits
systematic-mutations: /usr/local/bin/systematic-mutations
RNAdos: /usr/local/bin/RNAdos
AnalyseDists: /usr/local/bin/AnalyseDists
AnalyseSeqs: /usr/local/bin/AnalyseSeqs
RNAlocmin: /usr/local/bin/RNAlocmin
RNApvmin: /usr/local/bin/RNApvmin
b2ct: /usr/local/bin/b2ct
ct2db: /usr/local/bin/ct2db
kinwalker: /usr/local/bin/kinwalker
popt: /usr/local/bin/popt
62 changes: 62 additions & 0 deletions quay.io/biocontainers/ddquint/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,62 @@
url: https://biocontainers.pro/tools/ddquint
maintainer: '@vsoch'
description: singularity registry hpc automated addition for ddquint
latest:
0.1.0--pyhdfd78af_0:
sha256:4fda719b4d88f86dfd8f51278cffe52f11d4a50f16604f22b5255dfc184a06ae
tags:
0.1.0--pyhdfd78af_0:
sha256:4fda719b4d88f86dfd8f51278cffe52f11d4a50f16604f22b5255dfc184a06ae
docker: quay.io/biocontainers/ddquint
aliases:
ddquint: /usr/local/bin/ddquint
helpviewer: /usr/local/bin/helpviewer
img2png: /usr/local/bin/img2png
img2py: /usr/local/bin/img2py
img2xpm: /usr/local/bin/img2xpm
pycrust: /usr/local/bin/pycrust
pyshell: /usr/local/bin/pyshell
pyslices: /usr/local/bin/pyslices
pyslicesshell: /usr/local/bin/pyslicesshell
pywxrc: /usr/local/bin/pywxrc
spirv-as: /usr/local/bin/spirv-as
spirv-cfg: /usr/local/bin/spirv-cfg
spirv-dis: /usr/local/bin/spirv-dis
spirv-lesspipe.sh: /usr/local/bin/spirv-lesspipe.sh
spirv-link: /usr/local/bin/spirv-link
spirv-lint: /usr/local/bin/spirv-lint
spirv-objdump: /usr/local/bin/spirv-objdump
spirv-opt: /usr/local/bin/spirv-opt
spirv-reduce: /usr/local/bin/spirv-reduce
spirv-val: /usr/local/bin/spirv-val
wx-config: /usr/local/bin/wx-config
wxdemo: /usr/local/bin/wxdemo
wxdocs: /usr/local/bin/wxdocs
wxget: /usr/local/bin/wxget
wxrc: /usr/local/bin/wxrc
wxrc-3.2: /usr/local/bin/wxrc-3.2
gtk-builder-tool: /usr/local/bin/gtk-builder-tool
gtk-encode-symbolic-svg: /usr/local/bin/gtk-encode-symbolic-svg
gtk-launch: /usr/local/bin/gtk-launch
gtk-query-immodules-3.0: /usr/local/bin/gtk-query-immodules-3.0
gtk-query-settings: /usr/local/bin/gtk-query-settings
send2trash: /usr/local/bin/send2trash
wayland-scanner: /usr/local/bin/wayland-scanner
gi-compile-repository: /usr/local/bin/gi-compile-repository
gi-decompile-typelib: /usr/local/bin/gi-decompile-typelib
gi-inspect-typelib: /usr/local/bin/gi-inspect-typelib
xkbcli: /usr/local/bin/xkbcli
qconvex: /usr/local/bin/qconvex
qdelaunay: /usr/local/bin/qdelaunay
qhalf: /usr/local/bin/qhalf
qhull: /usr/local/bin/qhull
qvoronoi: /usr/local/bin/qvoronoi
rbox: /usr/local/bin/rbox
idle3.13: /usr/local/bin/idle3.13
pydoc3.13: /usr/local/bin/pydoc3.13
python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
rsvg-convert: /usr/local/bin/rsvg-convert
gtk-update-icon-cache: /usr/local/bin/gtk-update-icon-cache
gdk-pixbuf-thumbnailer: /usr/local/bin/gdk-pixbuf-thumbnailer
gdk-pixbuf-csource: /usr/local/bin/gdk-pixbuf-csource
12 changes: 12 additions & 0 deletions quay.io/biocontainers/distree/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
url: https://biocontainers.pro/tools/distree
maintainer: '@vsoch'
description: singularity registry hpc automated addition for distree
latest:
1.0.0--h4349ce8_0:
sha256:46cc14910d5608c66366e3285c2d233239434e89bf1376b4323654ac427e73a1
tags:
1.0.0--h4349ce8_0:
sha256:46cc14910d5608c66366e3285c2d233239434e89bf1376b4323654ac427e73a1
docker: quay.io/biocontainers/distree
aliases:
distree: /usr/local/bin/distree
12 changes: 12 additions & 0 deletions quay.io/biocontainers/fstic/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
url: https://biocontainers.pro/tools/fstic
maintainer: '@vsoch'
description: singularity registry hpc automated addition for fstic
latest:
1.0.0--h4349ce8_0:
sha256:170556752d24a2e3edb49434d4f18889554d595b293892bbc4e7bc2cf6c445d3
tags:
1.0.0--h4349ce8_0:
sha256:170556752d24a2e3edb49434d4f18889554d595b293892bbc4e7bc2cf6c445d3
docker: quay.io/biocontainers/fstic
aliases:
fstic: /usr/local/bin/fstic
38 changes: 38 additions & 0 deletions quay.io/biocontainers/macsylib/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
url: https://biocontainers.pro/tools/macsylib
maintainer: '@vsoch'
description: singularity registry hpc automated addition for macsylib
latest:
1.0.1--pyhdfd78af_0:
sha256:b4ed97b7b41bf18630d8011c41a5f8c6c98db0a2559cba27dd5f594243964568
tags:
1.0.1--pyhdfd78af_0:
sha256:b4ed97b7b41bf18630d8011c41a5f8c6c98db0a2559cba27dd5f594243964568
docker: quay.io/biocontainers/macsylib
aliases:
msl_data: /usr/local/bin/msl_data
msl_profile: /usr/local/bin/msl_profile
scalar: /usr/local/bin/scalar
git: /usr/local/bin/git
git-cvsserver: /usr/local/bin/git-cvsserver
git-receive-pack: /usr/local/bin/git-receive-pack
git-shell: /usr/local/bin/git-shell
git-upload-archive: /usr/local/bin/git-upload-archive
git-upload-pack: /usr/local/bin/git-upload-pack
gitk: /usr/local/bin/gitk
shmemrun: /usr/local/bin/shmemrun
oshCC: /usr/local/bin/oshCC
oshc++: /usr/local/bin/oshc++
oshcxx: /usr/local/bin/oshcxx
shmemCC: /usr/local/bin/shmemCC
shmemc++: /usr/local/bin/shmemc++
shmemcxx: /usr/local/bin/shmemcxx
oshcc: /usr/local/bin/oshcc
oshfort: /usr/local/bin/oshfort
oshmem_info: /usr/local/bin/oshmem_info
oshrun: /usr/local/bin/oshrun
shmemcc: /usr/local/bin/shmemcc
shmemfort: /usr/local/bin/shmemfort
aggregate_profile.pl: /usr/local/bin/aggregate_profile.pl
profile2mat.pl: /usr/local/bin/profile2mat.pl
ompi-clean: /usr/local/bin/ompi-clean
ompi-server: /usr/local/bin/ompi-server
99 changes: 99 additions & 0 deletions quay.io/biocontainers/promod3/container.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,99 @@
url: https://biocontainers.pro/tools/promod3
maintainer: '@vsoch'
description: singularity registry hpc automated addition for promod3
latest:
3.6.0--py310h184ae93_0:
sha256:45fc2b349e10d23552bec8bb7b4e88e4b05c5567451cbe731c158c0fba33a7d2
tags:
3.6.0--py310h184ae93_0:
sha256:45fc2b349e10d23552bec8bb7b4e88e4b05c5567451cbe731c158c0fba33a7d2
docker: quay.io/biocontainers/promod3
aliases:
chemdict_tool: /usr/local/bin/chemdict_tool
dng: /usr/local/bin/dng
glewinfo: /usr/local/bin/glewinfo
lddt: /usr/local/bin/lddt
molck: /usr/local/bin/molck
ost: /usr/local/bin/ost
parasail_aligner: /usr/local/bin/parasail_aligner
parasail_stats: /usr/local/bin/parasail_stats
pm: /usr/local/bin/pm
spirv-as: /usr/local/bin/spirv-as
spirv-cfg: /usr/local/bin/spirv-cfg
spirv-dis: /usr/local/bin/spirv-dis
spirv-lesspipe.sh: /usr/local/bin/spirv-lesspipe.sh
spirv-link: /usr/local/bin/spirv-link
spirv-lint: /usr/local/bin/spirv-lint
spirv-objdump: /usr/local/bin/spirv-objdump
spirv-opt: /usr/local/bin/spirv-opt
spirv-reduce: /usr/local/bin/spirv-reduce
spirv-val: /usr/local/bin/spirv-val
tmalign: /usr/local/bin/tmalign
tmscore: /usr/local/bin/tmscore
visualinfo: /usr/local/bin/visualinfo
voronota: /usr/local/bin/voronota
voronota-cadscore: /usr/local/bin/voronota-cadscore
voronota-contacts: /usr/local/bin/voronota-contacts
voronota-gl: /usr/local/bin/voronota-gl
voronota-js: /usr/local/bin/voronota-js
voronota-js-fast-iface-cadscore:
/usr/local/bin/voronota-js-fast-iface-cadscore
voronota-js-fast-iface-cadscore-matrix:
/usr/local/bin/voronota-js-fast-iface-cadscore-matrix
voronota-js-fast-iface-contacts:
/usr/local/bin/voronota-js-fast-iface-contacts
voronota-js-fast-iface-data-graph:
/usr/local/bin/voronota-js-fast-iface-data-graph
voronota-js-fast-iface-voromqa: /usr/local/bin/voronota-js-fast-iface-voromqa
voronota-js-ifeatures-voromqa: /usr/local/bin/voronota-js-ifeatures-voromqa
voronota-js-ligand-cadscore: /usr/local/bin/voronota-js-ligand-cadscore
voronota-js-membrane-voromqa: /usr/local/bin/voronota-js-membrane-voromqa
voronota-js-only-global-voromqa:
/usr/local/bin/voronota-js-only-global-voromqa
voronota-js-pdb-utensil-detect-inter-structure-contacts:
/usr/local/bin/voronota-js-pdb-utensil-detect-inter-structure-contacts
voronota-js-pdb-utensil-download-structure:
/usr/local/bin/voronota-js-pdb-utensil-download-structure
voronota-js-pdb-utensil-filter-atoms:
/usr/local/bin/voronota-js-pdb-utensil-filter-atoms
voronota-js-pdb-utensil-print-sequence-from-structure:
/usr/local/bin/voronota-js-pdb-utensil-print-sequence-from-structure
voronota-js-pdb-utensil-rename-chains:
/usr/local/bin/voronota-js-pdb-utensil-rename-chains
voronota-js-pdb-utensil-renumber-by-sequence:
/usr/local/bin/voronota-js-pdb-utensil-renumber-by-sequence
voronota-js-pdb-utensil-split-to-models:
/usr/local/bin/voronota-js-pdb-utensil-split-to-models
voronota-js-voroif-gnn: /usr/local/bin/voronota-js-voroif-gnn
voronota-js-voromqa: /usr/local/bin/voronota-js-voromqa
voronota-lt: /usr/local/bin/voronota-lt
voronota-membrane: /usr/local/bin/voronota-membrane
voronota-pocket: /usr/local/bin/voronota-pocket
voronota-resources: /usr/local/bin/voronota-resources
voronota-volumes: /usr/local/bin/voronota-volumes
voronota-voromqa: /usr/local/bin/voronota-voromqa
pax11publish: /usr/local/bin/pax11publish
cllayerinfo: /usr/local/bin/cllayerinfo
ldapadd: /usr/local/bin/ldapadd
ldapcompare: /usr/local/bin/ldapcompare
ldapdelete: /usr/local/bin/ldapdelete
ldapexop: /usr/local/bin/ldapexop
ldapmodify: /usr/local/bin/ldapmodify
ldapmodrdn: /usr/local/bin/ldapmodrdn
ldappasswd: /usr/local/bin/ldappasswd
ldapsearch: /usr/local/bin/ldapsearch
ldapurl: /usr/local/bin/ldapurl
ldapvc: /usr/local/bin/ldapvc
ldapwhoami: /usr/local/bin/ldapwhoami
wayland-scanner: /usr/local/bin/wayland-scanner
gi-compile-repository: /usr/local/bin/gi-compile-repository
gi-decompile-typelib: /usr/local/bin/gi-decompile-typelib
gi-inspect-typelib: /usr/local/bin/gi-inspect-typelib
sip-build: /usr/local/bin/sip-build
sip-distinfo: /usr/local/bin/sip-distinfo
sip-install: /usr/local/bin/sip-install
sip-module: /usr/local/bin/sip-module
sip-sdist: /usr/local/bin/sip-sdist
sip-wheel: /usr/local/bin/sip-wheel
mpg123: /usr/local/bin/mpg123
mpg123-id3dump: /usr/local/bin/mpg123-id3dump
Loading