diff --git a/quay.io/biocontainers/align_trim/container.yaml b/quay.io/biocontainers/align_trim/container.yaml new file mode 100644 index 0000000000000..bffec020fb269 --- /dev/null +++ b/quay.io/biocontainers/align_trim/container.yaml @@ -0,0 +1,18 @@ +url: https://biocontainers.pro/tools/align_trim +maintainer: '@vsoch' +description: singularity registry hpc automated addition for align_trim +latest: + 1.0.1--pyhdfd78af_0: + sha256:cf7a180e474aec951580411f67c0fd5915204a40ae8a2758eede7973d37f7ab3 +tags: + 1.0.1--pyhdfd78af_0: + sha256:cf7a180e474aec951580411f67c0fd5915204a40ae8a2758eede7973d37f7ab3 +docker: quay.io/biocontainers/align_trim +aliases: + align_trim: /usr/local/bin/align_trim + primalbedtools: /usr/local/bin/primalbedtools + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config diff --git a/quay.io/biocontainers/cactus-gfa-tools/container.yaml b/quay.io/biocontainers/cactus-gfa-tools/container.yaml new file mode 100644 index 0000000000000..6a635b4046a17 --- /dev/null +++ b/quay.io/biocontainers/cactus-gfa-tools/container.yaml @@ -0,0 +1,22 @@ +url: https://biocontainers.pro/tools/cactus-gfa-tools +maintainer: '@vsoch' +description: singularity registry hpc automated addition for cactus-gfa-tools +latest: + 0.1--h9948957_0: + sha256:6fafebd3c38f4a45ea0f8427f9056fa9ce1a6e9bc96969cf76628381ba0dd0e9 +tags: + 0.1--h9948957_0: + sha256:6fafebd3c38f4a45ea0f8427f9056fa9ce1a6e9bc96969cf76628381ba0dd0e9 +docker: quay.io/biocontainers/cactus-gfa-tools +aliases: + faprefix.sh: /usr/local/bin/faprefix.sh + gaf2paf: /usr/local/bin/gaf2paf + gaf2unstable: /usr/local/bin/gaf2unstable + gaffilter: /usr/local/bin/gaffilter + mzgaf2paf: /usr/local/bin/mzgaf2paf + paf2lastz: /usr/local/bin/paf2lastz + paf2stable: /usr/local/bin/paf2stable + pafcoverage: /usr/local/bin/pafcoverage + pafmask: /usr/local/bin/pafmask + rgfa-split: /usr/local/bin/rgfa-split + rgfa2paf: /usr/local/bin/rgfa2paf diff --git a/quay.io/biocontainers/delve-bio/container.yaml b/quay.io/biocontainers/delve-bio/container.yaml new file mode 100644 index 0000000000000..47b26b9eee626 --- /dev/null +++ b/quay.io/biocontainers/delve-bio/container.yaml @@ -0,0 +1,12 @@ +url: https://biocontainers.pro/tools/delve-bio +maintainer: '@vsoch' +description: singularity registry hpc automated addition for delve-bio +latest: + 0.1.0--h4349ce8_0: + sha256:1ac2a421f83ee9487c2888e75ea09bab42170c7e358a50c4506df03f53e01fbc +tags: + 0.1.0--h4349ce8_0: + sha256:1ac2a421f83ee9487c2888e75ea09bab42170c7e358a50c4506df03f53e01fbc +docker: quay.io/biocontainers/delve-bio +aliases: + delve: /usr/local/bin/delve diff --git a/quay.io/biocontainers/esme_esmf_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_esmf_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..8ca9c6ec5e873 --- /dev/null +++ b/quay.io/biocontainers/esme_esmf_psmpi_5_12_1/container.yaml @@ -0,0 +1,52 @@ +url: https://biocontainers.pro/tools/esme_esmf_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_esmf_psmpi_5_12_1 +latest: + 8.9.0--h499a0f0_0: + sha256:f5e38d4db531abbbecbef41326ac2e702c06f19297644423d496a1c3ef4177dc +tags: + 8.9.0--h499a0f0_0: + sha256:f5e38d4db531abbbecbef41326ac2e702c06f19297644423d496a1c3ef4177dc +docker: quay.io/biocontainers/esme_esmf_psmpi_5_12_1 +aliases: + fido2-assert: /usr/local/bin/fido2-assert + fido2-cred: /usr/local/bin/fido2-cred + fido2-token: /usr/local/bin/fido2-token + pcc: /usr/local/bin/pcc + prte-info: /usr/local/bin/prte-info + prte-submit: /usr/local/bin/prte-submit + prte-term: /usr/local/bin/prte-term + scp: /usr/local/bin/scp + sftp: /usr/local/bin/sftp + ssh: /usr/local/bin/ssh + ssh-add: /usr/local/bin/ssh-add + ssh-agent: /usr/local/bin/ssh-agent + ssh-keygen: /usr/local/bin/ssh-keygen + ssh-keyscan: /usr/local/bin/ssh-keyscan + sshd: /usr/local/bin/sshd + prte: /usr/local/bin/prte + prte_info: /usr/local/bin/prte_info + prted: /usr/local/bin/prted + prterun: /usr/local/bin/prterun + pterm: /usr/local/bin/pterm + prun: /usr/local/bin/prun + ESMF_PrintInfo: /usr/local/bin/ESMF_PrintInfo + ESMF_PrintInfoC: /usr/local/bin/ESMF_PrintInfoC + ESMF_Regrid: /usr/local/bin/ESMF_Regrid + ESMF_RegridWeightGen: /usr/local/bin/ESMF_RegridWeightGen + ESMF_Scrip2Unstruct: /usr/local/bin/ESMF_Scrip2Unstruct + ESMF_WebServController: /usr/local/bin/ESMF_WebServController + ESMX_Builder: /usr/local/bin/ESMX_Builder + nc4print: /usr/local/bin/nc4print + ocprint: /usr/local/bin/ocprint + chacl: /usr/local/bin/chacl + getfacl: /usr/local/bin/getfacl + setfacl: /usr/local/bin/setfacl + cdfdiff: /usr/local/bin/cdfdiff + ncmpidiff: /usr/local/bin/ncmpidiff + ncmpidump: /usr/local/bin/ncmpidump + ncmpigen: /usr/local/bin/ncmpigen + ncoffsets: /usr/local/bin/ncoffsets + ncvalidator: /usr/local/bin/ncvalidator + pnetcdf-config: /usr/local/bin/pnetcdf-config diff --git a/quay.io/biocontainers/esme_hdf5_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_hdf5_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..6162ab5788ba6 --- /dev/null +++ b/quay.io/biocontainers/esme_hdf5_psmpi_5_12_1/container.yaml @@ -0,0 +1,37 @@ +url: https://biocontainers.pro/tools/esme_hdf5_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_hdf5_psmpi_5_12_1 +latest: + 1.14.6--h43f4046_0: + sha256:a222db65dcba893944904ac0e1cd75c2e7f844f3b98f05940f9cbde0d65cbe6b +tags: + 1.14.6--h43f4046_0: + sha256:a222db65dcba893944904ac0e1cd75c2e7f844f3b98f05940f9cbde0d65cbe6b +docker: quay.io/biocontainers/esme_hdf5_psmpi_5_12_1 +aliases: + chacl: /usr/local/bin/chacl + getfacl: /usr/local/bin/getfacl + setfacl: /usr/local/bin/setfacl + h5pcc: /usr/local/bin/h5pcc + h5perf: /usr/local/bin/h5perf + h5pfc: /usr/local/bin/h5pfc + ph5diff: /usr/local/bin/ph5diff + h5fuse: /usr/local/bin/h5fuse + attr: /usr/local/bin/attr + getfattr: /usr/local/bin/getfattr + setfattr: /usr/local/bin/setfattr + h5delete: /usr/local/bin/h5delete + h5clear: /usr/local/bin/h5clear + h5format_convert: /usr/local/bin/h5format_convert + h5watch: /usr/local/bin/h5watch + h5copy: /usr/local/bin/h5copy + h5debug: /usr/local/bin/h5debug + h5diff: /usr/local/bin/h5diff + h5import: /usr/local/bin/h5import + h5jam: /usr/local/bin/h5jam + h5ls: /usr/local/bin/h5ls + h5mkgrp: /usr/local/bin/h5mkgrp + h5perf_serial: /usr/local/bin/h5perf_serial + h5redeploy: /usr/local/bin/h5redeploy + h5repack: /usr/local/bin/h5repack diff --git a/quay.io/biocontainers/esme_netcdf-c_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_netcdf-c_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..6532a456ead64 --- /dev/null +++ b/quay.io/biocontainers/esme_netcdf-c_psmpi_5_12_1/container.yaml @@ -0,0 +1,19 @@ +url: https://biocontainers.pro/tools/esme_netcdf-c_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_netcdf-c_psmpi_5_12_1 +latest: + 4.9.3--h5dc524c_0: + sha256:066aac4c608d583b6e19db7b78aa0db36aa05523c935f482b08c37d558558bc0 +tags: + 4.9.3--h5dc524c_0: + sha256:066aac4c608d583b6e19db7b78aa0db36aa05523c935f482b08c37d558558bc0 +docker: quay.io/biocontainers/esme_netcdf-c_psmpi_5_12_1 +aliases: + nc4print: /usr/local/bin/nc4print + ocprint: /usr/local/bin/ocprint + nc-config: /usr/local/bin/nc-config + nccopy: /usr/local/bin/nccopy + ncdump: /usr/local/bin/ncdump + ncgen: /usr/local/bin/ncgen + ncgen3: /usr/local/bin/ncgen3 diff --git a/quay.io/biocontainers/esme_netcdf-fortran_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_netcdf-fortran_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..baee335ce3853 --- /dev/null +++ b/quay.io/biocontainers/esme_netcdf-fortran_psmpi_5_12_1/container.yaml @@ -0,0 +1,13 @@ +url: https://biocontainers.pro/tools/esme_netcdf-fortran_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_netcdf-fortran_psmpi_5_12_1 +latest: + 4.6.2--hb2a3317_0: + sha256:142fd17166f0e587f6c7b74d6b234cace4a3edad5f5c044b1bbaee91a3d1a409 +tags: + 4.6.2--hb2a3317_0: + sha256:142fd17166f0e587f6c7b74d6b234cace4a3edad5f5c044b1bbaee91a3d1a409 +docker: quay.io/biocontainers/esme_netcdf-fortran_psmpi_5_12_1 +aliases: + nf-config: /usr/local/bin/nf-config diff --git a/quay.io/biocontainers/esme_omb_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_omb_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..2751d93c8a28b --- /dev/null +++ b/quay.io/biocontainers/esme_omb_psmpi_5_12_1/container.yaml @@ -0,0 +1,52 @@ +url: https://biocontainers.pro/tools/esme_omb_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_omb_psmpi_5_12_1 +latest: + 7.5.1--hcc2a5ad_0: + sha256:9e8d077dec001629e03097a0bc79be0137963214fc9e8d8f51dc96212a30d4b2 +tags: + 7.5.1--hcc2a5ad_0: + sha256:9e8d077dec001629e03097a0bc79be0137963214fc9e8d8f51dc96212a30d4b2 +docker: quay.io/biocontainers/esme_omb_psmpi_5_12_1 +aliases: + fido2-assert: /usr/local/bin/fido2-assert + fido2-cred: /usr/local/bin/fido2-cred + fido2-token: /usr/local/bin/fido2-token + pcc: /usr/local/bin/pcc + prte-info: /usr/local/bin/prte-info + prte-submit: /usr/local/bin/prte-submit + prte-term: /usr/local/bin/prte-term + scp: /usr/local/bin/scp + sftp: /usr/local/bin/sftp + ssh: /usr/local/bin/ssh + ssh-add: /usr/local/bin/ssh-add + ssh-agent: /usr/local/bin/ssh-agent + ssh-keygen: /usr/local/bin/ssh-keygen + ssh-keyscan: /usr/local/bin/ssh-keyscan + sshd: /usr/local/bin/sshd + prte: /usr/local/bin/prte + prte_info: /usr/local/bin/prte_info + prted: /usr/local/bin/prted + prterun: /usr/local/bin/prterun + pterm: /usr/local/bin/pterm + prun: /usr/local/bin/prun + ucx_perftest_daemon: /usr/local/bin/ucx_perftest_daemon + mpichversion: /usr/local/bin/mpichversion + mpivars: /usr/local/bin/mpivars + genl-ctrl-list: /usr/local/bin/genl-ctrl-list + idiag-socket-details: /usr/local/bin/idiag-socket-details + nf-ct-add: /usr/local/bin/nf-ct-add + nf-ct-events: /usr/local/bin/nf-ct-events + nf-ct-list: /usr/local/bin/nf-ct-list + nf-exp-add: /usr/local/bin/nf-exp-add + nf-exp-delete: /usr/local/bin/nf-exp-delete + nf-exp-list: /usr/local/bin/nf-exp-list + nf-log: /usr/local/bin/nf-log + nf-monitor: /usr/local/bin/nf-monitor + nf-queue: /usr/local/bin/nf-queue + nl-addr-add: /usr/local/bin/nl-addr-add + nl-addr-delete: /usr/local/bin/nl-addr-delete + nl-addr-list: /usr/local/bin/nl-addr-list + nl-class-add: /usr/local/bin/nl-class-add + nl-class-delete: /usr/local/bin/nl-class-delete diff --git a/quay.io/biocontainers/esme_pio_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_pio_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..4c561db5df0d6 --- /dev/null +++ b/quay.io/biocontainers/esme_pio_psmpi_5_12_1/container.yaml @@ -0,0 +1,11 @@ +url: https://biocontainers.pro/tools/esme_pio_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_pio_psmpi_5_12_1 +latest: + 2.6.6--hb2a3317_0: + sha256:8bca4b7b0a03640c045af950110af44cf28d5d2a50fbc3244203aa679f46a090 +tags: + 2.6.6--hb2a3317_0: + sha256:8bca4b7b0a03640c045af950110af44cf28d5d2a50fbc3244203aa679f46a090 +docker: quay.io/biocontainers/esme_pio_psmpi_5_12_1 diff --git a/quay.io/biocontainers/esme_pnetcdf_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_pnetcdf_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..a25adfb4b3ece --- /dev/null +++ b/quay.io/biocontainers/esme_pnetcdf_psmpi_5_12_1/container.yaml @@ -0,0 +1,20 @@ +url: https://biocontainers.pro/tools/esme_pnetcdf_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for + esme_pnetcdf_psmpi_5_12_1 +latest: + 1.14.1--hb2a3317_0: + sha256:3abdd05facdeba0d70406c3244d78b80a29cd05bddc5848493238330045d5acd +tags: + 1.14.1--hb2a3317_0: + sha256:3abdd05facdeba0d70406c3244d78b80a29cd05bddc5848493238330045d5acd +docker: quay.io/biocontainers/esme_pnetcdf_psmpi_5_12_1 +aliases: + cdfdiff: /usr/local/bin/cdfdiff + ncmpidiff: /usr/local/bin/ncmpidiff + ncmpidump: /usr/local/bin/ncmpidump + ncmpigen: /usr/local/bin/ncmpigen + ncoffsets: /usr/local/bin/ncoffsets + ncvalidator: /usr/local/bin/ncvalidator + pnetcdf-config: /usr/local/bin/pnetcdf-config + pnetcdf_version: /usr/local/bin/pnetcdf_version diff --git a/quay.io/biocontainers/esme_psmpi_5_12_1/container.yaml b/quay.io/biocontainers/esme_psmpi_5_12_1/container.yaml new file mode 100644 index 0000000000000..1f9cae4eb8332 --- /dev/null +++ b/quay.io/biocontainers/esme_psmpi_5_12_1/container.yaml @@ -0,0 +1,51 @@ +url: https://biocontainers.pro/tools/esme_psmpi_5_12_1 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for esme_psmpi_5_12_1 +latest: + 1.0.2--psmpi__h90a7f1b_0: + sha256:031dda342773d5a9fb721dfa96d6cbb2e721c6fd5fc6e68ced32d7631b632a22 +tags: + 1.0.2--psmpi__h90a7f1b_0: + sha256:031dda342773d5a9fb721dfa96d6cbb2e721c6fd5fc6e68ced32d7631b632a22 +docker: quay.io/biocontainers/esme_psmpi_5_12_1 +aliases: + fido2-assert: /usr/local/bin/fido2-assert + fido2-cred: /usr/local/bin/fido2-cred + fido2-token: /usr/local/bin/fido2-token + pcc: /usr/local/bin/pcc + prte-info: /usr/local/bin/prte-info + prte-submit: /usr/local/bin/prte-submit + prte-term: /usr/local/bin/prte-term + scp: /usr/local/bin/scp + sftp: /usr/local/bin/sftp + ssh: /usr/local/bin/ssh + ssh-add: /usr/local/bin/ssh-add + ssh-agent: /usr/local/bin/ssh-agent + ssh-keygen: /usr/local/bin/ssh-keygen + ssh-keyscan: /usr/local/bin/ssh-keyscan + sshd: /usr/local/bin/sshd + prte: /usr/local/bin/prte + prte_info: /usr/local/bin/prte_info + prted: /usr/local/bin/prted + prterun: /usr/local/bin/prterun + pterm: /usr/local/bin/pterm + prun: /usr/local/bin/prun + ESMF_PrintInfo: /usr/local/bin/ESMF_PrintInfo + ESMF_PrintInfoC: /usr/local/bin/ESMF_PrintInfoC + ESMF_Regrid: /usr/local/bin/ESMF_Regrid + ESMF_RegridWeightGen: /usr/local/bin/ESMF_RegridWeightGen + ESMF_Scrip2Unstruct: /usr/local/bin/ESMF_Scrip2Unstruct + ESMF_WebServController: /usr/local/bin/ESMF_WebServController + ESMX_Builder: /usr/local/bin/ESMX_Builder + gost12-256-hash: /usr/local/bin/gost12-256-hash + gost12-512-hash: /usr/local/bin/gost12-512-hash + edonr256-hash: /usr/local/bin/edonr256-hash + edonr512-hash: /usr/local/bin/edonr512-hash + ccmake: /usr/local/bin/ccmake + cmake: /usr/local/bin/cmake + cpack: /usr/local/bin/cpack + ctest: /usr/local/bin/ctest + ed2k-link: /usr/local/bin/ed2k-link + has160-hash: /usr/local/bin/has160-hash + magnet-link: /usr/local/bin/magnet-link + rhash: /usr/local/bin/rhash diff --git a/quay.io/biocontainers/maaslin3/container.yaml b/quay.io/biocontainers/maaslin3/container.yaml new file mode 100644 index 0000000000000..d92b6c2335868 --- /dev/null +++ b/quay.io/biocontainers/maaslin3/container.yaml @@ -0,0 +1,30 @@ +url: https://biocontainers.pro/tools/maaslin3 +maintainer: '@vsoch' +description: singularity registry hpc automated addition for maaslin3 +latest: + 0.99.16--r44hdfd78af_0: + sha256:4a7f3a2b58fc77a065f0715ef2b08267b7501eddcda4e549c3ec03e93df96011 +tags: + 0.99.16--r44hdfd78af_0: + sha256:4a7f3a2b58fc77a065f0715ef2b08267b7501eddcda4e549c3ec03e93df96011 +docker: quay.io/biocontainers/maaslin3 +aliases: + x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg + idle3.13: /usr/local/bin/idle3.13 + pydoc3.13: /usr/local/bin/pydoc3.13 + python3.13: /usr/local/bin/python3.13 + python3.13-config: /usr/local/bin/python3.13-config + numpy-config: /usr/local/bin/numpy-config + installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh + tomlq: /usr/local/bin/tomlq + xq: /usr/local/bin/xq + yq: /usr/local/bin/yq + jq: /usr/local/bin/jq + onig-config: /usr/local/bin/onig-config + activate-global-python-argcomplete: + /usr/local/bin/activate-global-python-argcomplete + python-argcomplete-check-easy-install-script: + /usr/local/bin/python-argcomplete-check-easy-install-script + register-python-argcomplete: /usr/local/bin/register-python-argcomplete + hb-info: /usr/local/bin/hb-info + tjbench: /usr/local/bin/tjbench