CI

fix: keep conda env and install branch snakemake via pip on top #176

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Workflow file for this run

.github/workflows/main.yml at cdae5b6

	name: CI

	on:
	push:
	branches:
	- master
	pull_request:
	branches_ignore: []

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Test run
	uses: ./
	with:
	directory: .test
	snakefile: .test/Snakefile
	args: "--cores 1"

	- name: Test run branch
	uses: ./
	with:
	directory: .test
	snakefile: .test/Snakefile
	args: "--cores 1"
	snakemake-branch: "main"

	- name: Test containerize
	uses: ./
	with:
	directory: .test
	snakefile: .test/Snakefile
	install-apptainer: true
	args: "--cores 1"
	task: "containerize"

	- name: Show Dockerfile
	run: \|
	cat Dockerfile