diff --git a/dx_app/resources/stjude/bin/generate_plot.py b/dx_app/resources/stjude/bin/generate_plot.py index b2a6476..576f602 100755 --- a/dx_app/resources/stjude/bin/generate_plot.py +++ b/dx_app/resources/stjude/bin/generate_plot.py @@ -91,9 +91,9 @@ def label_samples (row): combined = combined.drop(columns=["samples", "classes", "diagnosisNames"]) # Fill group in a way to avoid duplicates - combined['group'] = combined['group'].fillna('unknown ' + combined['attr_diagnosis_group']) + combined['group'] = combined['group'].fillna('Other ' + combined['attr_diagnosis_group']) # Fill unknown label values with sj_diseases - combined['label'] = combined['label'].fillna(combined['sj_diseases']) + combined['label'] = combined['label'].fillna(combined['sj_long_disease_name']) # Fill unknown colors with black combined['color'] = combined['color'].replace('Classification_tSNE_color (Manuscript)', 'black') # Fill remaining missing metadata values with 'unknown' diff --git a/dx_app/resources/stjude/metadata/Subtype_Groupings_for_tSNE.csv b/dx_app/resources/stjude/metadata/Subtype_Groupings_for_tSNE.csv index cf00729..06af9ae 100644 --- a/dx_app/resources/stjude/metadata/Subtype_Groupings_for_tSNE.csv +++ b/dx_app/resources/stjude/metadata/Subtype_Groupings_for_tSNE.csv @@ -1,418 +1,419 @@ -sj_disease,t_SNE group,t_SNE_label -AASTR,Diffuse Glioma,Anaplastic Astrocytoma -ABC,Bone,Aneurysmal Bone Cyst -ACA,Adrenal Gland,Adrenocortical Adenoma -ACC,Adrenal Gland,Adrenocortical Carcinoma -ACLG,Head and Neck,Adenoid Cystic Carcinoma of the Lacrimal Gland -ACN,Rare Solid Tumor,Acinar Cell Carcinoma -ACPG,Sellar,"Craniopharyngioma, Adamantinomatous Type" -ACPP,Choroid Plexus,Choroid Plexus Papilloma -ACT,Rare Solid Tumor,Adrenocortical Tumor -ACTUMP,Adrenal Gland,"Adrenocortical Tumor, Uncertain Malignant Potential" -ACYC,Head and Neck,Adenoid Cystic Carcinoma of the Salivary Gland -ADCT,Other Hematologic Malignancy,Atypical Dendritic Cell Tumor -ADNOS,Non-Rhab. Soft Tissue Tumor,"Adenocarcinoma, NOS" -AFH,Non-Rhab. Soft Tissue Tumor,Angiomatoid Fibrous Histiocytoma -AFIBS,Non-Rhab. Soft Tissue Tumor,"Fibrosarcoma, Abdominal" -AGNG,Encapsulated Glioma,Anaplastic Ganglioglioma -AITL,Rare Hematologic Malignancy,Angioimmunoblastic T-cell lymphoma -ALAL,Other Hematologic Malignancy,Acute Leukemias of Ambiguous Lineage -ALCL,Non-Hodgkin Lymphoma,Anaplastic Large Cell Lymphoma -ALCLALKP,Non-Hodgkin Lymphoma,Anaplastic Large-Cell Lymphoma ALK Positive -ALL,Acute Lymphoblastic Leukemia,"Acute Lymphoblastic Leukemia, NOS" -ALLNOS,Other Hematologic Malignancy,"Acute Lymphoblastic Leukemia, NOS" -AMBL,Medulloblastoma,Large Cell/Anaplastic Medulloblastoma -AMBLNWSG3,Medulloblastoma,"Anaplastic Medulloblastoma, Group 3" -AMBLNWSG4,Medulloblastoma,"Anaplastic Medulloblastoma, Group 4" -AMBLSHH,Medulloblastoma,"Large Cell/Anaplastic Medulloblastoma, SHH subtype" -AMKL,Acute Myeloid Leukemia,Acute Megakaryoblastic Leukemia -AMKLCBFA2T3GLIS2,Acute Myeloid Leukemia,"Acute Megakaryoblastic Leukemia, CBFA2T3-GLIS2" -AMKLKMT2A,Acute Myeloid Leukemia,"Acute Megakaryoblastic Leukemia, KMT2A rearrangement" -AML,Acute Myeloid Leukemia,Acute Myeloid Leukemia -AMLCBFA2T3GLIS2,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, CBFA2T3-GLIS2" -AMLCBFBMYH11,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, CBFB-MYH11" -AMLCBFNOS,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, Core Binding Factor, NOS" -AMLCEBPA,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, biallelic CEBPA alteration" -AMLETS,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, ETS family rearrangement" -AMLKMT2A,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, KMT2A rearrangement" -AMLNOS,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, NOS" -AMLNPM1,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, NPM1 alteration" -AMLNUP98,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, NUP98 rearrangement" -AMLPICALMMLLT10,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, PICALM-MLLT10" -AMLRUNX1CBFA2T2,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, RUNX1-CBFA2T2" -AMLRUNX1CBFA2T3,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, RUNX1-CBFA2T3" -AMLRUNX1RUNX1T1,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, RUNX1-RUNX1T1" -AMLRUNX1RUNX1T1L,Acute Myeloid Leukemia,"Acute Myeloid Leukemia, RUNX1-RUNX1T1 like" -AMML,Acute Myeloid Leukemia,Acute Myelomonocytic Leukemia -AMMLKMT2A,Acute Myeloid Leukemia,"Acute Myelomonocytic Leukemia, KMT2A rearrangement" -AMMLNPM1,Acute Myeloid Leukemia,"Acute Myelomonocytic Leukemia, NPM1 alteration" -AMNL,Acute Myeloid Leukemia,Acute Monoblastic Leukemia -AMOLKMT2A,Acute Myeloid Leukemia,"Acute Monoblastic/Monocytic Leukemia, KMT2A rearrangement" -AN,Skin,Atypical Nevus -ANGL,Rare Brain Tumor,Angiocentric Glioma -ANM,Other Brain Tumor,Acoustic Neuroma -AOAST,Rare Brain Tumor,Anaplastic Oligoastrocytoma -AOSL,Bone,Atypical Osteocartilaginous Lesion -AOT,Head and Neck,Adenomatoid Odontogenic Tumor -APE,Ependymomal Tumor,"Ependymomal Tumor, Anaplastic" -APEPF,Ependymomal Tumor,"Anaplastic Ependymoma, Posteriior Fossa" -APLPMLRARA,Acute Myeloid Leukemia,"Acute Promyelocytic Leukemia, PML-RARA" -APML,Acute Myeloid Leukemia,Acute Promyelocytic Leukemia -APXA,Encapsulated Glioma,Anaplastic Pleomorphic Xanthoastrocytoma -ARMS,Rhabdomyosarcoma,Alveolar -ASPS,Non-Rhab. Soft Tissue Tumor,Alveolar Soft Part Sarcoma -ASPZMN,Skin,Atypical Spitzoid Melanocytic Neoplasm -ASPZN,Skin,Atypical Spitzoid Neoplasm -ASTR,Other Brain Tumor,"Astrocytoma, NOS" -ATM,Rare Brain Tumor,Atypical Meningioma -ATRT,Embryonal Tumor,Atypical Teratoid/Rhabdoid Tumor -ATRTMYC,Rare Brain Tumor,"Atypical Teratoid/Rhabdoid Tumor, MYC subgroup" -ATRTSHH,Embryonal Tumor,"Atypical Teratoid/Rhabdoid Tumor, SHH subgroup" -ATRTTYR,Embryonal Tumor,"Atypical Teratoid/Rhabdoid Tumor, TYR subgroup" -AUL,Other Hematologic Malignancy,Acute Undifferentiated Leukemia -AULKMT2A,Other Hematologic Malignancy,"Acute Undifferentiated Leukemia, KMT2A rearrangement" -BALL,NA,NA -BALLBCRABL1,B-cell Lymphoblastic Leukemia,BCR-ABL1 -BALLBCRABL1L,B-cell Lymphoblastic Leukemia,BCR-ABL1 like -BALLCRLF2,B-cell Lymphoblastic Leukemia,CRLF2 rearrangement -BALLDUX4IGH,B-cell Lymphoblastic Leukemia,DUX4-IGH -BALLDUX4IGHL,B-cell Lymphoblastic Leukemia,DUX4-IGH like -BALLETV6RUNX1,B-cell Lymphoblastic Leukemia,ETV6-RUNX1 -BALLETV6RUNX1L,B-cell Lymphoblastic Leukemia,ETV6-RUNX1 like -BALLHLF,B-cell Lymphoblastic Leukemia,HLF rearrangement -BALLHYPER,B-cell Lymphoblastic Leukemia,Hyperdiploidy -BALLHYPO,B-cell Lymphoblastic Leukemia,Hypodiploidy -BALLIAMP21,B-cell Lymphoblastic Leukemia,iAMP21 -BALLIGHCEBPD,B-cell Lymphoblastic Leukemia,IGH-CEBPD -BALLIKZF1,B-cell Lymphoblastic Leukemia,IKZF1 N159Y -BALLKMT2A,B-cell Lymphoblastic Leukemia,KMT2A rearrangement -BALLKMT2AL,B-cell Lymphoblastic Leukemia,KMT2A rearrangement like -BALLMEF2D,B-cell Lymphoblastic Leukemia,MEF2D rearrangement -BALLMYC,B-cell Lymphoblastic Leukemia,MYC rearrangement -BALLNOS,B-cell Lymphoblastic Leukemia,NOS -BALLNUTM1,B-cell Lymphoblastic Leukemia,NUTM1 rearrangement -BALLPAX5,B-cell Lymphoblastic Leukemia,PAX5 Alteration -BALLPAX5P80R,B-cell Lymphoblastic Leukemia,PAX5 P80R -BALLTCF3HLF,B-cell Lymphoblastic Leukemia,TCF3-HLF -BALLTCF3PBX1,B-cell Lymphoblastic Leukemia,TCF3-PBX1 -BALLZEB2CEBPE,B-cell Lymphoblastic Leukemia,ZEB2 alteration and CEBPE rearrangement -BALLZNF384,B-cell Lymphoblastic Leukemia,ZNF384 rearrangement -BALLZNF384L,B-cell Lymphoblastic Leukemia,ZNF384 rearrangement like -BCC,Rare Solid Tumor,Basal Cell Carcinoma -BCS,Non-Rhab. Soft Tissue Tumor,BCOR-CCNB3 sarcoma -BCUP,Other Hematologic Malignancy,Miscelaneous Blood Cancer -BERMS,Rhabdomyosarcoma,Botryoid Type Embryonal -BGCT,Germ Cell Tumor,"Germ Cell Tumor, Brain" -BL,Non-Hodgkin Lymphoma,Burkitt Lymphoma -BLLBCRABL1L,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, BCR-ABL1 like" -BLLNOS,Non-Hodgkin Lymphoma,"B-Lymphoblastic Lymphoma, NOS" -BLLTCF3HLF,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, TCF3-HLF" -BLLTCF3PBX1,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, TCF3-PBX1" -BMGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Brain" -BMT,Germ Cell Tumor,Mature Teratoma -BPDCN,Rare Hematologic Malignancy,Blastic Plasmacytoid Dendritic Cell Neoplasm -BT,NA,NA -BTNOS,Other Brain Tumor,"Brain Tumor, NOS" -BYST,Germ Cell Tumor,"Yolk Sac Tumor, Brain" -CBF,Acute Myeloid Leukemia,Core Binding Factor -CCA,Germ Cell Tumor,Choriocarcinoma -CCRCC,Kidney,Renal Clear Cell Carcinoma -CCS,Non-Rhab. Soft Tissue Tumor,Clear Cell Sarcoma -CCSK,Kidney,Clear Cell Sarcoma of Kidney -CCY,Rare Brain Tumor,Colloid Cyst -CEFTCIC,Other Brain Tumor,"CNS Ewing Sarcoma Family Tumor, CIC alteration" -CHBL,Bone,Chondroblastoma -CHDM,Bone,Chordoma -CHOS,Bone,Chondroblastic Osteosarcoma -CHS,Bone,Chondrosarcoma -CICRSB,Other Brain Tumor,"CIC-Rearranged Sarcoma, Brain" -CMF,Non-Rhab. Soft Tissue Tumor,Cellular Myofibroma -CML,Other Hematologic Malignancy,Chronic Myeloid Leukemia -CMLN,Skin,Congenital Melanocytic Nevus -CMN,Kidney,Congenital Mesoblastic Nephroma -CNC,Neuroepithelial/Glioneuronal Tumor,Central Neurocytoma -CNL,Other Hematologic Malignancy,Chronic Neutrophilic Leukemia -CNOS,Other Solid Tumor,Unknown Carcinoma -CPC,Choroid Plexus,Choroid Plexus Carcinoma -CPG,Rare Brain Tumor,"Craniopharyngioma, NOS" -CPP,Choroid Plexus,Choroid Plexus Papilloma -DASTR,Diffuse Glioma,Diffuse Astrocytoma -DES,Non-Rhab. Soft Tissue Tumor,Desmoid/Aggressive Fibromatosis -DFSP,Skin,Dermatofibrosarcoma Protuberans -DIA,Neuroepithelial/Glioneuronal Tumor,Desmoplastic Infantile Astrocytoma -DIFG,Diffuse Glioma,Diffuse Glioma -DIFHG,Diffuse Glioma,Diffuse Hemispheric Glioma -DIG,Rare Brain Tumor,Desmoplastic Infantile Ganglioglioma -DIPG,Diffuse Glioma,Diffuse Intrinsic Pontine Glioma -DLBCLNOS,Non-Hodgkin Lymphoma,Diffuse Large B-cell Lymphoma -DMBL,Rare Brain Tumor,Desmoplastic/Nodular Medulloblastoma -DMBLSHH,Medulloblastoma,"Desmoplastic/Nodular Medulloblastoma, SHH subtype" -DMG,Diffuse Glioma,Diffuse Midline Glioma -DNT,Neuroepithelial/Glioneuronal Tumor,Dysembryoplastic Neuroepithelial Tumor -DSRCT,Non-Rhab. Soft Tissue Tumor,Desmoplastic Small Round Cell Tumor -DYS,Germ Cell Tumor,Dysgerminoma -EACNOS,Rare Solid Tumor,"Endometrioid Adenocarcinoma, NOS" -EAML,Kidney,Renal Epitheloid Angiomyolipoma -EBMT,Rare Brain Tumor,"Embryonal Tumor, Brain" -ECNOS,Germ Cell Tumor,"Embryonal Carcinoma, NOS" -EHAE,Rare Solid Tumor,Epithelioid Hemangioendothelioma -EMALT,Rare Hematologic Malignancy,Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue (MALT lymphoma) -EMBT,Embryonal Tumor,"Embryonal Tumor, Brain" -EMZL,Non-Hodgkin Lymphoma,Extranodal Marginal Zone Lymphoma -ENCG,Encapsulated Glioma,Encapsulated Glioma -ENKTL,Rare Hematologic Malignancy,Extranodal NK-/T-Cell Lymphoma -EPIS,Non-Rhab. Soft Tissue Tumor,Epithelioid Sarcoma -EPMT,Ependymomal Tumor,Other -EPMTA,Ependymomal Tumor,Anaplastic -EPMTNOS,Rare Brain Tumor,"Ependymomal Tumor, NOS" -EPMTPF,Ependymomal Tumor,Posterior Fossa -EPMTST,Ependymomal Tumor,Spinal Tumor -EPMTSU,Ependymomal Tumor,Supratentorial -ERMS,Rhabdomyosarcoma,Embryonal -ESOP,Other Hematologic Malignancy,"Eosinophilia, NOS" -ESST,Non-Rhab. Soft Tissue Tumor,Ewing Sarcoma of Soft Tissue -ETMR,Embryonal Tumor,"Embryonal Tumor with Multilayered Rosettes, Brain" -ETPLL,T-cell Lymphoblastic Leukemia,Early T-Cell Precursor Lymphoblastic Leukemia -EWS,Bone,Ewing Sarcoma -FASTR,Rare Brain Tumor,Fibrillary Astrocytoma -FIBS,Rare Solid Tumor,Fibrosarcoma -FIOS,Bone,Fibroblastic Osteosarcoma -FL,Non-Hodgkin Lymphoma,Follicular Lymphoma -FLC,Rare Solid Tumor,Fibrolamellar Carcinoma -FMS,Non-Rhab. Soft Tissue Tumor,Fibromyxoid Sarcoma -FMT,Non-Rhab. Soft Tissue Tumor,Fibroblastic/Myofibroblastic Tumor -FUP,Non-Rhab. Soft Tissue Tumor,Fibrous Umbilical Polyp -GB,Diffuse Glioma,Glioblastoma -GCFIB,Non-Rhab. Soft Tissue Tumor,Giant Cell Fibroblastoma -GCT,Germ Cell Tumor,Germ Cell Tumor -GCTB,Bone,Giant Cell Tumor of Bone -GCTNOS,Germ Cell Tumor,Germ Cell Tumor -GICT,Bone,"Giant Cell Tumor, NOS" -GINET,Bowel,Gastrointestinal Neuroendocrine Tumor -GIST,Bowel,Gastrointestinal Stromal Tumor -GLNOS,Rare Brain Tumor,"Glioneuronal Neoplasm, NOS" -GMN,Germ Cell Tumor,Germinoma -GN,Rare Solid Tumor,Ganglioneuroma -GNBL,Peripheral Nervous System,Ganglioneuroblastoma -GNG,Encapsulated Glioma,Ganglioglioma -GNOS,Other Brain Tumor,"Glioma, NOS" -GRCT,Rare Solid Tumor,Granulosa Cell Tumor -HAN,Other Solid Tumor,"Head and Neck Tumor, NOS" -HB,Liver,Hepatoblastoma -HCC,Liver,Hepatocellular Carcinoma -HEAD_AND_NECK,Other Solid Tumor,"Head and Neck Tumor, NOS" -HFNH,Liver,Hepatic Focal Nodular Hyperplasia -HGBCL,Non-Hodgkin Lymphoma,"High-Grade B-Cell Lymphoma, NOS" -HGCS,Other Brain Tumor,High-Grade Calvarium Sarcoma -HGG,NA,NA -HGGNOS,Diffuse Glioma,"High-Grade Glioma, NOS" -HGGT,Neuroepithelial/Glioneuronal Tumor,High-Grade Glioneuronal Tumor -HGNET,Neuroepithelial/Glioneuronal Tumor,High-Grade Neuroepithelial Tumor -HGS,Rare Solid Tumor,High Grade Sarcoma -HGSRC,Non-Rhab. Soft Tissue Tumor,High-Grade Sarcoma -HL,Hodgkin Lymphoma,Hodgkin Lymphoma -HM,NA,NA -IFS,Non-Rhab. Soft Tissue Tumor,Infantile Fibrosarcoma -IMT,Non-Rhab. Soft Tissue Tumor,Inflammatory Myofibroblastic Tumor -IMTFETCREB,Other Brain Tumor,Intracranial mesenchymal tumor with FET-CREB fusion -IMTL,Lung,Inflammatory Myofibroblastic Lung Tumor -IMTS,Bowel,Inflammatory Myofibroblastic Stomach Tumor -IPTL,Rare Solid Tumor,"Inflammatory Pseudotumor, Lung" -JGCOT,Rare Solid Tumor,Juvenile Granulosa Cell Ovarian Tumor -JGCT,Kidney,Juxtagliomerular Cell Tumor -JXG,Kidney,Juvenile Xanthogranuloma -KID,Rare Solid Tumor,Kidney -LBL,Non-Rhab. Soft Tissue Tumor,Lipoblastoma -LCH,Other Hematologic Malignancy,Langerhans Cell Histiocytosis -LDCHL,Hodgkin Lymphoma,Lymphocyte-Depleted Classical -LFBR,Non-Rhab. Soft Tissue Tumor,Lipofibromatosis -LGGNOS,Encapsulated Glioma,"Low-Grade Glioma, NOS" -LGGNT,Neuroepithelial/Glioneuronal Tumor,Low-Grade Glioneuronal Tumor -LGMN,Non-Rhab. Soft Tissue Tumor,Low-Grade Mesenchymal Neoplasm -LGNET,Neuroepithelial/Glioneuronal Tumor,Low-Grade Neuroepithelial Tumor -LGORT,Kidney,Low-Grade Oncocytic Renal Tumor -LGPNST,Peripheral Nervous System,Low Grade Peripheral Nerve Sheath Tumor -LIPO,Rare Solid Tumor,Liposarcoma -LIV,Liver,"Liver, NOS" -LIVER,Liver,"Liver, NOS" -LM,Rare Solid Tumor,Leiomyoma -LMNOS,Liver,"Liver Malignancy, NOS" -LMS,Rare Solid Tumor,"Leiomyosarcoma, NOS" -LRCHL,Hodgkin Lymphoma,Lymphocyte-Rich Classical -MACNOS,Rare Solid Tumor,"Mucinous Adenocarcinoma, NOS" -MACR,Rare Solid Tumor,Mucinous Adenocarcinoma of the Colon and Rectum -MAO,Ovary/Fallopian Tube,"Mucinous Adenocarcinoma, Ovarian" -MB,NA,NA -MBENSHH,Medulloblastoma,"Medulloblastoma with Extensive Nodularity, SHH subtype" -MBL,Medulloblastoma,"Medulloblastoma, NOS" -MBLG3,Medulloblastoma,"Medulloblastoma, Group 3" -MBLG4,Medulloblastoma,"Medulloblastoma, Group 4" -MBLSHH,Medulloblastoma,"Medulloblastoma, SHH subtype" -MBLWNT,Medulloblastoma,"Medulloblastoma, WNT subtype" -MBN,Non-Hodgkin Lymphoma,Mature B-Cell Neoplasms -MBOV,Rare Solid Tumor,Mucinous Borderline Ovarian Tumor -MBT,Other Brain Tumor,Miscellaneous Brain Tumor -MCC,Rare Solid Tumor,Merkel Cell Carcinoma -MCCHL,Hodgkin Lymphoma,Mixed Cellularity Classical -MCHS,Bone,Mesenchymal Chondrosarcoma -MCL,Rare Hematologic Malignancy,Mantle Cell Lymphoma -MDEP,Rare Brain Tumor,Medulloepithelioma -MDS,Other Hematologic Malignancy,Myelodysplastic Syndromes -MEL,Skin,Melanoma -MEM,Rhabdomyosarcoma,Ectomesenchymoma -MEPMST,Ependymomal Tumor,"Mixed Myxopapillary Anaplastic, Spinal Tumor" -MFH,Rare Solid Tumor,Malignant Fibrous Histiocytoma -MGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Testis" -MGCTNOS,Germ Cell Tumor,"Mixed Germ Cell Tumor, NOS" -MLN,Skin,Melanocytic Nevus -MME,Rare Solid Tumor,Malignant Mesenchymoma -MMEL,Liver,Malignant Mesenchymoma of the Liver -MNG,Meningothelial Tumor,Meningioma -MNM,Other Hematologic Malignancy,Myeloid Neoplasm -MO,Bone,Myositis Ossificans -MOV,Ovary/Fallopian Tube,Mucinous Ovarian Cancer -MPALTNOS,Other Hematologic Malignancy,"Mixed Phenotype Acute Leukemia, T/Myeloid, NOS" -MPC,Non-Rhab. Soft Tissue Tumor,Myopericytoma -MPE,Ependymomal Tumor,Myxopapillary -MPEFV,Ependymomal Tumor,"Myxopapillary Ependymoma, Fourth Ventricle" -MPEPF,Ependymomal Tumor,"Myxopapillary, Posterior Fossa" -MPN,Other Hematologic Malignancy,Myeloproliferative Neoplasms -MPNST,Peripheral Nervous System,Malignant Peripheral Nerve Sheath Tumor -MRT,Rhabdoid,"Rhabdoid Cancer, Kidney" -MRTB,Rhabdoid,Malignant Rhabdoid Tumor of the Bladder -MRTL,Rhabdoid,Malignant Rhabdoid Tumor of the Liver -MS,Other Hematologic Malignancy,Myeloid Sarcoma -MSCERMS,Rhabdomyosarcoma,Mixed Spindle Cell and Embryonal -MTHYM,Thymus,Malignant Thymoma -MUCC,Head and Neck,Mucoepidermoid Carcinoma -MYCF,Rare Hematologic Malignancy,Mycosis Fungoides -MYEC,Head and Neck,Myoepithelial Carcinoma -MYEL,Other Hematologic Malignancy,Myeloid Neoplasm -NBL,Peripheral Nervous System,Neuroblastoma -NEP,Rare Brain Tumor,Neuroepithelioma -NFIB,Peripheral Nervous System,Neurofibroma -NHL,Non-Hodgkin Lymphoma,Non-Hodgkin Lymphoma -NIFTP,Thyroid,Non-invasive follicularÊthyroidÊneoplasm with papillary like nuclear features -NLPHL,Hodgkin Lymphoma,Nodular Lymphocyte-Predominant -NMC,Peripheral Nervous System,Neuromuscular choristoma -NMMEL,Skin,Nodular Malignant Melanoma -Not Applicable,, -NPC,Head and Neck,Nasopharyngeal Carcinoma -NSCHL,Hodgkin Lymphoma,Nodular Sclerosis Classical -NTHP,Thyroid,Nodular Thyroid Hyperplasia -NTK,Head and Neck,Neurothekeoma -OAST,Rare Brain Tumor,Oligoastrocytoma -OB,Bone,Osteoblastoma -ODG,Rare Brain Tumor,Oligodendroglioma -ODYS,Germ Cell Tumor,"Dysgerminoma, Ovarian" -OGCT,Germ Cell Tumor,Ovarian Germ Cell Tumor -OMGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Ovary" -OMT,Germ Cell Tumor,"Mature Teratoma, Ovarian" -OO,Bone,Osteoid Osteoma -OS,Bone,Osteosarcoma -OSOS,Bone,Osteoblastic Osteosarcoma -OYST,Germ Cell Tumor,"Yolk Sac Tumor, Ovary" -PADA,Head and Neck,Pleomorphic Adenoma -PANET,Pancreas,Pancreatic Neuroendocrine Tumor -PAOS,Bone,Parosteal Osteosarcoma -PAST,Encapsulated Glioma,Pilocytic Astrocytoma -PAT,Pineal,Pineal Anlage Tumor -PBL,Pineal,Pineoblastoma -PCLPD,Rare Hematologic Malignancy,Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorders -PDYS,Germ Cell Tumor,"Dysgerminoma, Pelvis" -PEOS,Bone,Periosteal Osteosarcoma -PEPNOS,Rare Brain Tumor,"Papillary Ependymoma, NOS" -PGNG,Non-Rhab. Soft Tissue Tumor,Paraganglioma -PHC,Adrenal Gland,Pheochromocytoma -PINC,Pineal,Pineocytoma -PINT,Pineal,Pineal Tumor -PMA,Encapsulated Glioma,Pilomyxoid Astrocytoma -PNET,Embryonal Tumor,Primitive Neuroectodermal Tumor -PPB,Rare Solid Tumor,Pleuropulmonary Blastoma -PPNET,Rare Brain Tumor,Peripheral Primitive Neuroectodermal Tumor -PPT,Pineal,Pineal Parenchymal Tumor -PPTID,Pineal,Pineal Parenchymal Tumor of Intermediate Differentiation -PRCC,Kidney,Papillary Renal Cell Carcinoma -PTPR,Pineal,Papillary Tumor of the Pineal Region -PXA,Encapsulated Glioma,Pleomorphic Xanthoastrocytoma -RBL,Head and Neck,Retinoblastoma -RCC,Kidney,Renal Cell Carcinoma -RCSNOS,Non-Rhab. Soft Tissue Tumor,Round Cell Sarcoma -RDD,Other Hematologic Malignancy,Rosai-Dorfman Disease -RGNT,Rare Brain Tumor,Rosette-forming Glioneuronal Tumor -RHB,NA,NA -RMS,Rhabdomyosarcoma,Other -RMSNOS,Rhabdomyosarcoma,"Rhabdomyosarcoma, NOS" -RTNOS,Rhabdoid,"Rhabdoid Tumor, NOS" -SARCNOS,Non-Rhab. Soft Tissue Tumor,"Sarcoma, NOS" -SBL,Head and Neck,Sialoblastoma -SCCNOS,Skin,Squamous Cell Carcinoma -SCHW,Peripheral Nervous System,Schwannoma -SCN,Non-Rhab. Soft Tissue Tumor,Spindle Cell Neoplasm -SCOS,Bone,Small Cell Osteosarcoma -SCRMS,Rhabdomyosarcoma,Spindle Cell -SCSNOS,Non-Rhab. Soft Tissue Tumor,Spindle Cell Sarcoma -SCSRMS,Rhabdomyosarcoma,Spindle Cell/Sclerosing -SCST,Ovary/Fallopian Tube,Sex Cord Stromal Tumor -SCUP,Other Solid Tumor,Miscelaneous Solid Tumor -SCY,Non-Rhab. Soft Tissue Tumor,Serous cystadenoma -SEGA,Rare Brain Tumor,Subependymal Giant Cell Astrocytoma -SEM,Germ Cell Tumor,Seminoma -SETTLE,Thyroid,Spindle Epithelial Tumor with Thymus-Like Differentiation -SFT,Rare Solid Tumor,Solitary Fibrous Tumor/Hemangiopericytoma -SGAT,Head and Neck,Salivary gland anlage tumor -SGCA,Rare Brain Tumor,Subependymal Giant Cell Astrocytoma -SIPT,Rare Solid Tumor,Stomach Inflammatory Pseudotumor -SJGENBN,Bone,General Bone Tumor -SJGENLK,Rare Hematologic Malignancy,General Leukemia -SJNM,NA,NA -SJNORM,NA,NA -SJSCD,NA,NA -SKCMCRTC1TRIM11,Skin,"Cutaneous Melanoma, CRTC1-TRIM11" -SLCT,Ovary/Fallopian Tube,Sertoli-Leydig Cell Tumor -SMA,Rare Solid Tumor,Sclerosing Microcystic Adenocarcinoma -SPN,Pancreas,Solid Pseudopapillary Neoplasm of the Pancreas -SPYST,Germ Cell Tumor,"Yolk Sac Tumor, Sacrococcygeal or Presacral" -SPZM,Skin,Spitzoid Melanoma -SSPC,Rare Solid Tumor,Serous Surface Papillary Carcinoma -SSRCC,Bowel,Signet Ring Cell Carcinoma of the Stomach -ST,NA,NA -STP,Rare Solid Tumor,Soft Tissue Perineuroma -STSNOS,Rare Solid Tumor,"Soft Tissue Sarcoma, NOS" -SYNS,Non-Rhab. Soft Tissue Tumor,Synovial Sarcoma -TALL,T-cell Lymphoblastic Leukemia,Other -TALLBCL11B,T-cell Lymphoblastic Leukemia,"T-Cell Acute Lymphoblastic Leukemia, BCL11B rearrangement" -TALLHOXA,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, HOXA rearrangement" -TALLKMT2A,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, KMT2A rearrangement" -TALLLMO1,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, LMO1 rearrangement" -TALLLMO2,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, LMO2 rearrangement" -TALLNKX2,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, NKX2 rearrangement" -TALLNOS,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, NOS" -TALLTAL1,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, TAL1 rearrangement" -TALLTLX1,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, TLX1 rearrangement" -TALLTLX3,T-cell Lymphoblastic Leukemia,"T-cell Acute Lymphoblastic Leukemia, TLX3 rearrangement" -TAML,Other Hematologic Malignancy,Therapy-Related Acute Myeloid Leukemia -TEOS,Bone,Telangiectatic Osteosarcoma -TFAPH,Thyroid,Thyroid Gland Follicular Adenoma with Papillary Hyperplasia -THFO,Thyroid,Follicular Thyroid Cancer -THHC,Thyroid,Hurthle Cell Thyroid Cancer -THME,Thyroid,Medullary Thyroid Cancer -THPA,Thyroid,Papillary Thyroid Cancer -TLL,Non-Hodgkin Lymphoma,T-cell Lymphoblastic Lymphoma -TLLLMO1,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, LMO1 rearrangement" -TLLNKX2,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, NKX2 rearrangement" -TLLNOS,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, NOS" -TLLTAL1,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, TAL1 rearrangement" -TMDS,Other Hematologic Malignancy,Therapy-Related Myelodysplastic Syndrome -TMN,Other Hematologic Malignancy,Therapy-Related Myeloid Neoplasm -TT,Germ Cell Tumor,"Teratoma, Testis" -TTC,Germ Cell Tumor,Teratocarcinoma -TTNOS,Germ Cell Tumor,"Teratoma, NOS" -TYST,Germ Cell Tumor,"Yolk Sac Tumor, Testis" -UESL,Liver,Undifferentiated Embryonal Sarcoma of the Liver -URCS,Rare Solid Tumor,Undifferentiated Round Cell Sarcoma -WLM,NA,NA -WT,Kidney,"Wilms, Other" -WTB,Kidney,"Wilms, Bilateral" -YSTNOS,Germ Cell Tumor,"Yolk Sac Tumor, NOS" -YSTP,Germ Cell Tumor,"Yolk Sac Tumor, Parotid" \ No newline at end of file +sj_disease,t_SNE group,t_SNE_label +AASTR,Diffuse Glioma,Anaplastic Astrocytoma +ABC,Bone,Aneurysmal Bone Cyst +ACA,Adrenal Gland,Adrenocortical Adenoma +ACC,Adrenal Gland,Adrenocortical Carcinoma +ACLG,Head and Neck,Adenoid Cystic Carcinoma of the Lacrimal Gland +ACN,Rare Solid Tumor,Acinar Cell Carcinoma +ACPG,Sellar,"Craniopharyngioma, Adamantinomatous Type" +ACPP,Choroid Plexus,Choroid Plexus Papilloma +ACT,Rare Solid Tumor,Adrenocortical Tumor +ACTUMP,Adrenal Gland,"Adrenocortical Tumor, Uncertain Malignant Potential" +ACYC,Head and Neck,Adenoid Cystic Carcinoma of the Salivary Gland +ADCT,Other Hematologic Malignancy,Atypical Dendritic Cell Tumor +ADNOS,Non-Rhab. Soft Tissue Tumor,"Adenocarcinoma, NOS" +AFH,Non-Rhab. Soft Tissue Tumor,Angiomatoid Fibrous Histiocytoma +AFIBS,Non-Rhab. Soft Tissue Tumor,"Fibrosarcoma, Abdominal" +AGNG,Encapsulated Glioma,Anaplastic Ganglioglioma +AITL,Rare Hematologic Malignancy,Angioimmunoblastic T-cell lymphoma +ALAL,Other Hematologic Malignancy,Acute Leukemias of Ambiguous Lineage +ALCL,Non-Hodgkin Lymphoma,Anaplastic Large Cell Lymphoma +ALCLALKP,Non-Hodgkin Lymphoma,Anaplastic Large-Cell Lymphoma ALK Positive +ALL,Acute Lymphoblastic Leukemia,"Acute Lymphoblastic Leukemia, NOS" +ALLNOS,Other Hematologic Malignancy,"Acute Lymphoblastic Leukemia, NOS" +AMBL,Medulloblastoma,Large Cell/Anaplastic Medulloblastoma +AMBLNWSG3,Medulloblastoma,"Anaplastic Medulloblastoma, Group 3" +AMBLNWSG4,Medulloblastoma,"Anaplastic Medulloblastoma, Group 4" +AMBLSHH,Medulloblastoma,"Large Cell/Anaplastic Medulloblastoma, SHH subtype" +AMKL,Acute Myeloid Leukemia,Acute Megakaryoblastic Leukemia +AMKLCBFA2T3GLIS2,Acute Myeloid Leukemia,"Acute Megakaryoblastic Leukemia, CBFA2T3-GLIS2" +AMKLKMT2A,Acute Myeloid Leukemia,"Acute Megakaryoblastic Leukemia, KMT2A rearrangement" +AML,Acute Myeloid Leukemia,Acute Myeloid Leukemia +AMLCBFA2T3GLIS2,Acute Myeloid Leukemia,CBFA2T3-GLIS2 +AMLCBFBMYH11,Acute Myeloid Leukemia,CBFB-MYH11 +AMLCBFNOS,Acute Myeloid Leukemia,"Core Binding Factor, NOS" +AMLCEBPA,Acute Myeloid Leukemia,biallelic CEBPA alteration +AMLETS,Acute Myeloid Leukemia,ETS family rearrangement +AMLKMT2A,Acute Myeloid Leukemia,KMT2A rearrangement +AMLNOS,Acute Myeloid Leukemia,NOS +AMLNPM1,Acute Myeloid Leukemia,NPM1 alteration +AMLNUP98,Acute Myeloid Leukemia,NUP98 rearrangement +AMLPICALMMLLT10,Acute Myeloid Leukemia,PICALM-MLLT10 +AMLRUNX1CBFA2T2,Acute Myeloid Leukemia,RUNX1-CBFA2T2 +AMLRUNX1CBFA2T3,Acute Myeloid Leukemia,RUNX1-CBFA2T3 +AMLRUNX1RUNX1T1,Acute Myeloid Leukemia,RUNX1-RUNX1T1 +AMLRUNX1RUNX1T1L,Acute Myeloid Leukemia,RUNX1-RUNX1T1 like +AMML,Acute Myeloid Leukemia,Acute Myelomonocytic Leukemia +AMMLKMT2A,Acute Myeloid Leukemia,"Acute Myelomonocytic Leukemia, KMT2A rearrangement" +AMMLNPM1,Acute Myeloid Leukemia,"Acute Myelomonocytic Leukemia, NPM1 alteration" +AMNL,Acute Myeloid Leukemia,Acute Monoblastic Leukemia +AMOLKMT2A,Acute Myeloid Leukemia,"Acute Monoblastic/Monocytic Leukemia, KMT2A rearrangement" +AN,Skin,Atypical Nevus +ANGL,Rare Brain Tumor,Angiocentric Glioma +ANM,Other Brain Tumor,Acoustic Neuroma +AOAST,Rare Brain Tumor,Anaplastic Oligoastrocytoma +AOSL,Bone,Atypical Osteocartilaginous Lesion +AOT,Head and Neck,Adenomatoid Odontogenic Tumor +APE,Ependymomal Tumor,"Ependymomal Tumor, Anaplastic" +APEPF,Ependymomal Tumor,"Anaplastic Ependymoma, Posteriior Fossa" +APLPMLRARA,Acute Myeloid Leukemia,"Acute Promyelocytic Leukemia, PML-RARA" +APML,Acute Myeloid Leukemia,Acute Promyelocytic Leukemia +APXA,Encapsulated Glioma,Anaplastic Pleomorphic Xanthoastrocytoma +ARMS,Rhabdomyosarcoma,Alveolar +ASPS,Non-Rhab. Soft Tissue Tumor,Alveolar Soft Part Sarcoma +ASPZMN,Skin,Atypical Spitzoid Melanocytic Neoplasm +ASPZN,Skin,Atypical Spitzoid Neoplasm +ASTR,Other Brain Tumor,"Astrocytoma, NOS" +ATM,Rare Brain Tumor,Atypical Meningioma +ATRT,Embryonal Tumor,Atypical Teratoid/Rhabdoid Tumor +ATRTMYC,Rare Brain Tumor,"Atypical Teratoid/Rhabdoid Tumor, MYC subgroup" +ATRTSHH,Embryonal Tumor,"Atypical Teratoid/Rhabdoid Tumor, SHH subgroup" +ATRTTYR,Embryonal Tumor,"Atypical Teratoid/Rhabdoid Tumor, TYR subgroup" +AUL,Other Hematologic Malignancy,Acute Undifferentiated Leukemia +AULKMT2A,Other Hematologic Malignancy,"Acute Undifferentiated Leukemia, KMT2A rearrangement" +BALL,NA,NA +BALLBCRABL1,B-cell Lymphoblastic Leukemia,BCR-ABL1 +BALLBCRABL1L,B-cell Lymphoblastic Leukemia,BCR-ABL1 like +BALLCRLF2,B-cell Lymphoblastic Leukemia,CRLF2 rearrangement +BALLDUX4IGH,B-cell Lymphoblastic Leukemia,DUX4-IGH +BALLDUX4IGHL,B-cell Lymphoblastic Leukemia,DUX4-IGH like +BALLETV6RUNX1,B-cell Lymphoblastic Leukemia,ETV6-RUNX1 +BALLETV6RUNX1L,B-cell Lymphoblastic Leukemia,ETV6-RUNX1 like +BALLHLF,B-cell Lymphoblastic Leukemia,HLF rearrangement +BALLHYPER,B-cell Lymphoblastic Leukemia,Hyperdiploidy +BALLHYPO,B-cell Lymphoblastic Leukemia,Hypodiploidy +BALLIAMP21,B-cell Lymphoblastic Leukemia,iAMP21 +BALLIGHCEBPD,B-cell Lymphoblastic Leukemia,IGH-CEBPD +BALLIKZF1,B-cell Lymphoblastic Leukemia,IKZF1 N159Y +BALLKMT2A,B-cell Lymphoblastic Leukemia,KMT2A rearrangement +BALLKMT2AL,B-cell Lymphoblastic Leukemia,KMT2A rearrangement like +BALLMEF2D,B-cell Lymphoblastic Leukemia,MEF2D rearrangement +BALLMYC,B-cell Lymphoblastic Leukemia,MYC rearrangement +BALLNOS,B-cell Lymphoblastic Leukemia,NOS +BALLNUTM1,B-cell Lymphoblastic Leukemia,NUTM1 rearrangement +BALLPAX5,B-cell Lymphoblastic Leukemia,PAX5 Alteration +BALLPAX5P80R,B-cell Lymphoblastic Leukemia,PAX5 P80R +BALLTCF3HLF,B-cell Lymphoblastic Leukemia,TCF3-HLF +BALLTCF3PBX1,B-cell Lymphoblastic Leukemia,TCF3-PBX1 +BALLZEB2CEBPE,B-cell Lymphoblastic Leukemia,ZEB2 alteration and CEBPE rearrangement +BALLZNF384,B-cell Lymphoblastic Leukemia,ZNF384 rearrangement +BALLZNF384L,B-cell Lymphoblastic Leukemia,ZNF384 rearrangement like +BCC,Rare Solid Tumor,Basal Cell Carcinoma +BCS,Non-Rhab. Soft Tissue Tumor,BCOR-CCNB3 sarcoma +BCUP,Other Hematologic Malignancy,Miscelaneous Blood Cancer +BERMS,Rhabdomyosarcoma,Botryoid Type Embryonal +BGCT,Germ Cell Tumor,"Germ Cell Tumor, Brain" +BL,Non-Hodgkin Lymphoma,Burkitt Lymphoma +BLLBCRABL1L,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, BCR-ABL1 like" +BLLNOS,Non-Hodgkin Lymphoma,"B-Lymphoblastic Lymphoma, NOS" +BLLTCF3HLF,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, TCF3-HLF" +BLLTCF3PBX1,Non-Hodgkin Lymphoma,"B-cell Lymphoblastic Lymphoma, TCF3-PBX1" +BMGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Brain" +BMT,Germ Cell Tumor,Mature Teratoma +BPDCN,Rare Hematologic Malignancy,Blastic Plasmacytoid Dendritic Cell Neoplasm +BSARC,Other Brain Tumor,Brain Sarcoma +BT,NA,NA +BTNOS,Other Brain Tumor,"Brain Tumor, NOS" +BYST,Germ Cell Tumor,"Yolk Sac Tumor, Brain" +CBF,Acute Myeloid Leukemia,Core Binding Factor +CCA,Germ Cell Tumor,Choriocarcinoma +CCRCC,Kidney,Renal Clear Cell Carcinoma +CCS,Non-Rhab. Soft Tissue Tumor,Clear Cell Sarcoma +CCSK,Kidney,Clear Cell Sarcoma of Kidney +CCY,Rare Brain Tumor,Colloid Cyst +CEFTCIC,Other Brain Tumor,"CNS Ewing Sarcoma Family Tumor, CIC alteration" +CHBL,Bone,Chondroblastoma +CHDM,Bone,Chordoma +CHOS,Bone,Chondroblastic Osteosarcoma +CHS,Bone,Chondrosarcoma +CICRSB,Other Brain Tumor,"CIC-Rearranged Sarcoma, Brain" +CMF,Non-Rhab. Soft Tissue Tumor,Cellular Myofibroma +CML,Other Hematologic Malignancy,Chronic Myeloid Leukemia +CMLN,Skin,Congenital Melanocytic Nevus +CMN,Kidney,Congenital Mesoblastic Nephroma +CNC,Neuroepithelial/Glioneuronal Tumor,Central Neurocytoma +CNL,Other Hematologic Malignancy,Chronic Neutrophilic Leukemia +CNOS,Other Solid Tumor,Unknown Carcinoma +CPC,Choroid Plexus,Choroid Plexus Carcinoma +CPG,Rare Brain Tumor,"Craniopharyngioma, NOS" +CPP,Choroid Plexus,Choroid Plexus Papilloma +DASTR,Diffuse Glioma,Diffuse Astrocytoma +DES,Non-Rhab. Soft Tissue Tumor,Desmoid/Aggressive Fibromatosis +DFSP,Skin,Dermatofibrosarcoma Protuberans +DIA,Neuroepithelial/Glioneuronal Tumor,Desmoplastic Infantile Astrocytoma +DIFG,Diffuse Glioma,Diffuse Glioma +DIFHG,Diffuse Glioma,Diffuse Hemispheric Glioma +DIG,Rare Brain Tumor,Desmoplastic Infantile Ganglioglioma +DIPG,Diffuse Glioma,Diffuse Intrinsic Pontine Glioma +DLBCLNOS,Non-Hodgkin Lymphoma,Diffuse Large B-cell Lymphoma +DMBL,Rare Brain Tumor,Desmoplastic/Nodular Medulloblastoma +DMBLSHH,Medulloblastoma,"Desmoplastic/Nodular Medulloblastoma, SHH subtype" +DMG,Diffuse Glioma,Diffuse Midline Glioma +DNT,Neuroepithelial/Glioneuronal Tumor,Dysembryoplastic Neuroepithelial Tumor +DSRCT,Non-Rhab. Soft Tissue Tumor,Desmoplastic Small Round Cell Tumor +DYS,Germ Cell Tumor,Dysgerminoma +EACNOS,Rare Solid Tumor,"Endometrioid Adenocarcinoma, NOS" +EAML,Kidney,Renal Epitheloid Angiomyolipoma +EBMT,Rare Brain Tumor,"Embryonal Tumor, Brain" +ECNOS,Germ Cell Tumor,"Embryonal Carcinoma, NOS" +EHAE,Rare Solid Tumor,Epithelioid Hemangioendothelioma +EMALT,Rare Hematologic Malignancy,Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue (MALT lymphoma) +EMBT,Embryonal Tumor,"Embryonal Tumor, Brain" +EMZL,Non-Hodgkin Lymphoma,Extranodal Marginal Zone Lymphoma +ENCG,Encapsulated Glioma,Encapsulated Glioma +ENKTL,Rare Hematologic Malignancy,Extranodal NK-/T-Cell Lymphoma +EPIS,Non-Rhab. Soft Tissue Tumor,Epithelioid Sarcoma +EPMT,Ependymomal Tumor,Other +EPMTA,Ependymomal Tumor,Anaplastic +EPMTNOS,Rare Brain Tumor,"Ependymomal Tumor, NOS" +EPMTPF,Ependymomal Tumor,Posterior Fossa +EPMTST,Ependymomal Tumor,Spinal Tumor +EPMTSU,Ependymomal Tumor,Supratentorial +ERMS,Rhabdomyosarcoma,Embryonal +ESOP,Other Hematologic Malignancy,"Eosinophilia, NOS" +ESST,Non-Rhab. Soft Tissue Tumor,Ewing Sarcoma of Soft Tissue +ETMR,Embryonal Tumor,"Embryonal Tumor with Multilayered Rosettes, Brain" +ETPLL,T-cell Lymphoblastic Leukemia,Early T-Cell Precursor Lymphoblastic Leukemia +EWS,Bone,Ewing Sarcoma +FASTR,Rare Brain Tumor,Fibrillary Astrocytoma +FIBS,Rare Solid Tumor,Fibrosarcoma +FIOS,Bone,Fibroblastic Osteosarcoma +FL,Non-Hodgkin Lymphoma,Follicular Lymphoma +FLC,Rare Solid Tumor,Fibrolamellar Carcinoma +FMS,Non-Rhab. Soft Tissue Tumor,Fibromyxoid Sarcoma +FMT,Non-Rhab. Soft Tissue Tumor,Fibroblastic/Myofibroblastic Tumor +FUP,Non-Rhab. Soft Tissue Tumor,Fibrous Umbilical Polyp +GB,Diffuse Glioma,Glioblastoma +GCFIB,Non-Rhab. Soft Tissue Tumor,Giant Cell Fibroblastoma +GCT,Germ Cell Tumor,Germ Cell Tumor +GCTB,Bone,Giant Cell Tumor of Bone +GCTNOS,Germ Cell Tumor,Germ Cell Tumor +GICT,Bone,"Giant Cell Tumor, NOS" +GINET,Bowel,Gastrointestinal Neuroendocrine Tumor +GIST,Bowel,Gastrointestinal Stromal Tumor +GLNOS,Rare Brain Tumor,"Glioneuronal Neoplasm, NOS" +GMN,Germ Cell Tumor,Germinoma +GN,Rare Solid Tumor,Ganglioneuroma +GNBL,Peripheral Nervous System,Ganglioneuroblastoma +GNG,Encapsulated Glioma,Ganglioglioma +GNOS,Other Brain Tumor,"Glioma, NOS" +GRCT,Rare Solid Tumor,Granulosa Cell Tumor +HAN,Other Solid Tumor,"Head and Neck Tumor, NOS" +HB,Liver,Hepatoblastoma +HCC,Liver,Hepatocellular Carcinoma +HEAD_AND_NECK,Other Solid Tumor,"Head and Neck Tumor, NOS" +HFNH,Liver,Hepatic Focal Nodular Hyperplasia +HGBCL,Non-Hodgkin Lymphoma,"High-Grade B-Cell Lymphoma, NOS" +HGCS,Other Brain Tumor,High-Grade Calvarium Sarcoma +HGG,NA,NA +HGGNOS,Diffuse Glioma,"High-Grade Glioma, NOS" +HGGT,Neuroepithelial/Glioneuronal Tumor,High-Grade Glioneuronal Tumor +HGNET,Neuroepithelial/Glioneuronal Tumor,High-Grade Neuroepithelial Tumor +HGS,Rare Solid Tumor,High Grade Sarcoma +HGSRC,Non-Rhab. Soft Tissue Tumor,High-Grade Sarcoma +HL,Hodgkin Lymphoma,Hodgkin Lymphoma +HM,NA,NA +IFS,Non-Rhab. Soft Tissue Tumor,Infantile Fibrosarcoma +IMT,Non-Rhab. Soft Tissue Tumor,Inflammatory Myofibroblastic Tumor +IMTFETCREB,Other Brain Tumor,Intracranial mesenchymal tumor with FET-CREB fusion +IMTL,Lung,Inflammatory Myofibroblastic Lung Tumor +IMTS,Bowel,Inflammatory Myofibroblastic Stomach Tumor +IPTL,Rare Solid Tumor,"Inflammatory Pseudotumor, Lung" +JGCOT,Rare Solid Tumor,Juvenile Granulosa Cell Ovarian Tumor +JGCT,Kidney,Juxtagliomerular Cell Tumor +JXG,Kidney,Juvenile Xanthogranuloma +KID,Rare Solid Tumor,Kidney +LBL,Non-Rhab. Soft Tissue Tumor,Lipoblastoma +LCH,Other Hematologic Malignancy,Langerhans Cell Histiocytosis +LDCHL,Hodgkin Lymphoma,Lymphocyte-Depleted Classical +LFBR,Non-Rhab. Soft Tissue Tumor,Lipofibromatosis +LGGNOS,Encapsulated Glioma,"Low-Grade Glioma, NOS" +LGGNT,Neuroepithelial/Glioneuronal Tumor,Low-Grade Glioneuronal Tumor +LGMN,Non-Rhab. Soft Tissue Tumor,Low-Grade Mesenchymal Neoplasm +LGNET,Neuroepithelial/Glioneuronal Tumor,Low-Grade Neuroepithelial Tumor +LGORT,Kidney,Low-Grade Oncocytic Renal Tumor +LGPNST,Peripheral Nervous System,Low Grade Peripheral Nerve Sheath Tumor +LIPO,Rare Solid Tumor,Liposarcoma +LIV,Liver,"Liver, NOS" +LIVER,Liver,"Liver, NOS" +LM,Rare Solid Tumor,Leiomyoma +LMNOS,Liver,"Liver Malignancy, NOS" +LMS,Rare Solid Tumor,"Leiomyosarcoma, NOS" +LRCHL,Hodgkin Lymphoma,Lymphocyte-Rich Classical +MACNOS,Rare Solid Tumor,"Mucinous Adenocarcinoma, NOS" +MACR,Rare Solid Tumor,Mucinous Adenocarcinoma of the Colon and Rectum +MAO,Ovary/Fallopian Tube,"Mucinous Adenocarcinoma, Ovarian" +MB,NA,NA +MBENSHH,Medulloblastoma,"Medulloblastoma with Extensive Nodularity, SHH subtype" +MBL,Medulloblastoma,NOS +MBLG3,Medulloblastoma,Group 3 +MBLG4,Medulloblastoma,Group 4 +MBLSHH,Medulloblastoma,SHH subtype +MBLWNT,Medulloblastoma,WNT subtype +MBN,Non-Hodgkin Lymphoma,Mature B-Cell Neoplasms +MBOV,Rare Solid Tumor,Mucinous Borderline Ovarian Tumor +MBT,Other Brain Tumor,Miscellaneous Brain Tumor +MCC,Rare Solid Tumor,Merkel Cell Carcinoma +MCCHL,Hodgkin Lymphoma,Mixed Cellularity Classical +MCHS,Bone,Mesenchymal Chondrosarcoma +MCL,Rare Hematologic Malignancy,Mantle Cell Lymphoma +MDEP,Rare Brain Tumor,Medulloepithelioma +MDS,Other Hematologic Malignancy,Myelodysplastic Syndromes +MEL,Skin,Melanoma +MEM,Rhabdomyosarcoma,Ectomesenchymoma +MEPMST,Ependymomal Tumor,"Mixed Myxopapillary Anaplastic, Spinal Tumor" +MFH,Rare Solid Tumor,Malignant Fibrous Histiocytoma +MGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Testis" +MGCTNOS,Germ Cell Tumor,"Mixed Germ Cell Tumor, NOS" +MLN,Skin,Melanocytic Nevus +MME,Rare Solid Tumor,Malignant Mesenchymoma +MMEL,Liver,Malignant Mesenchymoma of the Liver +MNG,Meningothelial Tumor,Meningioma +MNM,Other Hematologic Malignancy,Myeloid Neoplasm +MO,Bone,Myositis Ossificans +MOV,Ovary/Fallopian Tube,Mucinous Ovarian Cancer +MPALTNOS,Other Hematologic Malignancy,"Mixed Phenotype Acute Leukemia, T/Myeloid, NOS" +MPC,Non-Rhab. Soft Tissue Tumor,Myopericytoma +MPE,Ependymomal Tumor,Myxopapillary +MPEFV,Ependymomal Tumor,"Myxopapillary Ependymoma, Fourth Ventricle" +MPEPF,Ependymomal Tumor,"Myxopapillary, Posterior Fossa" +MPN,Other Hematologic Malignancy,Myeloproliferative Neoplasms +MPNST,Peripheral Nervous System,Malignant Peripheral Nerve Sheath Tumor +MRT,Rhabdoid,"Rhabdoid Cancer, Kidney" +MRTB,Rhabdoid,Malignant Rhabdoid Tumor of the Bladder +MRTL,Rhabdoid,Malignant Rhabdoid Tumor of the Liver +MS,Other Hematologic Malignancy,Myeloid Sarcoma +MSCERMS,Rhabdomyosarcoma,Mixed Spindle Cell and Embryonal +MTHYM,Thymus,Malignant Thymoma +MUCC,Head and Neck,Mucoepidermoid Carcinoma +MYCF,Rare Hematologic Malignancy,Mycosis Fungoides +MYEC,Head and Neck,Myoepithelial Carcinoma +MYEL,Other Hematologic Malignancy,Myeloid Neoplasm +NBL,Peripheral Nervous System,Neuroblastoma +NEP,Rare Brain Tumor,Neuroepithelioma +NFIB,Peripheral Nervous System,Neurofibroma +NHL,Non-Hodgkin Lymphoma,Non-Hodgkin Lymphoma +NIFTP,Thyroid,Non-invasive follicularÊthyroidÊneoplasm with papillary like nuclear features +NLPHL,Hodgkin Lymphoma,Nodular Lymphocyte-Predominant +NMC,Peripheral Nervous System,Neuromuscular choristoma +NMMEL,Skin,Nodular Malignant Melanoma +Not Applicable,, +NPC,Head and Neck,Nasopharyngeal Carcinoma +NSCHL,Hodgkin Lymphoma,Nodular Sclerosis Classical +NTHP,Thyroid,Nodular Thyroid Hyperplasia +NTK,Head and Neck,Neurothekeoma +OAST,Rare Brain Tumor,Oligoastrocytoma +OB,Bone,Osteoblastoma +ODG,Rare Brain Tumor,Oligodendroglioma +ODYS,Germ Cell Tumor,"Dysgerminoma, Ovarian" +OGCT,Germ Cell Tumor,Ovarian Germ Cell Tumor +OMGCT,Germ Cell Tumor,"Mixed Germ Cell Tumor, Ovary" +OMT,Germ Cell Tumor,"Mature Teratoma, Ovarian" +OO,Bone,Osteoid Osteoma +OS,Bone,Osteosarcoma +OSOS,Bone,Osteoblastic Osteosarcoma +OYST,Germ Cell Tumor,"Yolk Sac Tumor, Ovary" +PADA,Head and Neck,Pleomorphic Adenoma +PANET,Pancreas,Pancreatic Neuroendocrine Tumor +PAOS,Bone,Parosteal Osteosarcoma +PAST,Encapsulated Glioma,Pilocytic Astrocytoma +PAT,Pineal,Pineal Anlage Tumor +PBL,Pineal,Pineoblastoma +PCLPD,Rare Hematologic Malignancy,Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorders +PDYS,Germ Cell Tumor,"Dysgerminoma, Pelvis" +PEOS,Bone,Periosteal Osteosarcoma +PEPNOS,Rare Brain Tumor,"Papillary Ependymoma, NOS" +PGNG,Non-Rhab. Soft Tissue Tumor,Paraganglioma +PHC,Adrenal Gland,Pheochromocytoma +PINC,Pineal,Pineocytoma +PINT,Pineal,Pineal Tumor +PMA,Encapsulated Glioma,Pilomyxoid Astrocytoma +PNET,Embryonal Tumor,Primitive Neuroectodermal Tumor +PPB,Rare Solid Tumor,Pleuropulmonary Blastoma +PPNET,Rare Brain Tumor,Peripheral Primitive Neuroectodermal Tumor +PPT,Pineal,Pineal Parenchymal Tumor +PPTID,Pineal,Pineal Parenchymal Tumor of Intermediate Differentiation +PRCC,Kidney,Papillary Renal Cell Carcinoma +PTPR,Pineal,Papillary Tumor of the Pineal Region +PXA,Encapsulated Glioma,Pleomorphic Xanthoastrocytoma +RBL,Head and Neck,Retinoblastoma +RCC,Kidney,Renal Cell Carcinoma +RCSNOS,Non-Rhab. Soft Tissue Tumor,Round Cell Sarcoma +RDD,Other Hematologic Malignancy,Rosai-Dorfman Disease +RGNT,Rare Brain Tumor,Rosette-forming Glioneuronal Tumor +RHB,NA,NA +RMS,Rhabdomyosarcoma,Other +RMSNOS,Rhabdomyosarcoma,"Rhabdomyosarcoma, NOS" +RTNOS,Rhabdoid,"Rhabdoid Tumor, NOS" +SARCNOS,Non-Rhab. Soft Tissue Tumor,"Sarcoma, NOS" +SBL,Head and Neck,Sialoblastoma +SCCNOS,Skin,Squamous Cell Carcinoma +SCHW,Peripheral Nervous System,Schwannoma +SCN,Non-Rhab. Soft Tissue Tumor,Spindle Cell Neoplasm +SCOS,Bone,Small Cell Osteosarcoma +SCRMS,Rhabdomyosarcoma,Spindle Cell +SCSNOS,Non-Rhab. Soft Tissue Tumor,Spindle Cell Sarcoma +SCSRMS,Rhabdomyosarcoma,Spindle Cell/Sclerosing +SCST,Ovary/Fallopian Tube,Sex Cord Stromal Tumor +SCUP,Other Solid Tumor,Miscelaneous Solid Tumor +SCY,Non-Rhab. Soft Tissue Tumor,Serous cystadenoma +SEGA,Rare Brain Tumor,Subependymal Giant Cell Astrocytoma +SEM,Germ Cell Tumor,Seminoma +SETTLE,Thyroid,Spindle Epithelial Tumor with Thymus-Like Differentiation +SFT,Rare Solid Tumor,Solitary Fibrous Tumor/Hemangiopericytoma +SGAT,Head and Neck,Salivary gland anlage tumor +SGCA,Rare Brain Tumor,Subependymal Giant Cell Astrocytoma +SIPT,Rare Solid Tumor,Stomach Inflammatory Pseudotumor +SJGENBN,Bone,General Bone Tumor +SJGENLK,Rare Hematologic Malignancy,General Leukemia +SJNM,NA,NA +SJNORM,NA,NA +SJSCD,NA,NA +SKCMCRTC1TRIM11,Skin,"Cutaneous Melanoma, CRTC1-TRIM11" +SLCT,Ovary/Fallopian Tube,Sertoli-Leydig Cell Tumor +SMA,Rare Solid Tumor,Sclerosing Microcystic Adenocarcinoma +SPN,Pancreas,Solid Pseudopapillary Neoplasm of the Pancreas +SPYST,Germ Cell Tumor,"Yolk Sac Tumor, Sacrococcygeal or Presacral" +SPZM,Skin,Spitzoid Melanoma +SSPC,Rare Solid Tumor,Serous Surface Papillary Carcinoma +SSRCC,Bowel,Signet Ring Cell Carcinoma of the Stomach +ST,NA,NA +STP,Rare Solid Tumor,Soft Tissue Perineuroma +STSNOS,Rare Solid Tumor,"Soft Tissue Sarcoma, NOS" +SYNS,Non-Rhab. Soft Tissue Tumor,Synovial Sarcoma +TALL,T-cell Lymphoblastic Leukemia,Other +TALLBCL11B,T-cell Lymphoblastic Leukemia,BCL11B rearrangement +TALLHOXA,T-cell Lymphoblastic Leukemia,HOXA rearrangement +TALLKMT2A,T-cell Lymphoblastic Leukemia,KMT2A rearrangement +TALLLMO1,T-cell Lymphoblastic Leukemia,LMO1 rearrangement +TALLLMO2,T-cell Lymphoblastic Leukemia,LMO2 rearrangement +TALLNKX2,T-cell Lymphoblastic Leukemia,NKX2 rearrangement +TALLNOS,T-cell Lymphoblastic Leukemia,NOS +TALLTAL1,T-cell Lymphoblastic Leukemia,TAL1 rearrangement +TALLTLX1,T-cell Lymphoblastic Leukemia,TLX1 rearrangement +TALLTLX3,T-cell Lymphoblastic Leukemia,TLX3 rearrangement +TAML,Other Hematologic Malignancy,Therapy-Related Acute Myeloid Leukemia +TEOS,Bone,Telangiectatic Osteosarcoma +TFAPH,Thyroid,Thyroid Gland Follicular Adenoma with Papillary Hyperplasia +THFO,Thyroid,Follicular Thyroid Cancer +THHC,Thyroid,Hurthle Cell Thyroid Cancer +THME,Thyroid,Medullary Thyroid Cancer +THPA,Thyroid,Papillary Thyroid Cancer +TLL,Non-Hodgkin Lymphoma,T-cell Lymphoblastic Lymphoma +TLLLMO1,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, LMO1 rearrangement" +TLLNKX2,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, NKX2 rearrangement" +TLLNOS,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, NOS" +TLLTAL1,Non-Hodgkin Lymphoma,"T-cell Lymphoblastic Lymphoma, TAL1 rearrangement" +TMDS,Other Hematologic Malignancy,Therapy-Related Myelodysplastic Syndrome +TMN,Other Hematologic Malignancy,Therapy-Related Myeloid Neoplasm +TT,Germ Cell Tumor,"Teratoma, Testis" +TTC,Germ Cell Tumor,Teratocarcinoma +TTNOS,Germ Cell Tumor,"Teratoma, NOS" +TYST,Germ Cell Tumor,"Yolk Sac Tumor, Testis" +UESL,Liver,Undifferentiated Embryonal Sarcoma of the Liver +URCS,Rare Solid Tumor,Undifferentiated Round Cell Sarcoma +WLM,NA,NA +WT,Kidney,"Wilms, Other" +WTB,Kidney,"Wilms, Bilateral" +YSTNOS,Germ Cell Tumor,"Yolk Sac Tumor, NOS" +YSTP,Germ Cell Tumor,"Yolk Sac Tumor, Parotid"