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It seems that #25677 has indeed improved performance of queries on $files tables, but only for the first 1 to 2 executions after a cluster restart. The first 1-2 executions takes less than a second, but after that it consistently takes 1 minute for the same query.
The cumulative user memory in the first execution is 11-12 MB but 1.72GB in subsequent executions. In stage 0 CPU time is rougly the same, but blocked time goes from 3 minutes to 6 hours.
We can reproduce this behavior consistently after restarting the cluster. Downgrading to 476 eliminates the issue, and the query consistently completes in about 1.5 seconds every time.