INSDC Benchmarking Scripts

Automated benchmarking scripts for testing INSDC data download performance.

Quick Start

# Install with Poetry
poetry install

# Or with pip
pip install -r requirements.txt

# Configure
cp config.yaml.example config.yaml
# Edit config.yaml with your settings

# Run HTTP benchmark
python scripts/benchmark_http.py \
  --dataset SRR12345678 \
  --repository ENA \
  --site nci

# Run FTP benchmark  
python scripts/benchmark_ftp.py \
  --dataset SRR12345678 \
  --repository ENA \
  --site nci

Supported Protocols

• ✅ HTTP/HTTPS (wget-based)
• ✅ FTP (ftplib-based)
• 🔄 Globus (coming soon)
• 🔄 Aspera (coming soon)

Configuration

See config.yaml.example for all options.

Documentation

• Installation Guide
• Usage Guide
• Protocol Guides