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@BaranziniLab

Baranzini Lab UCSF

The Baranzini lab at UCSF explores the genetic and molecular mechanisms underlying complex diseases.

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  1. BioRouter BioRouter Public

    Foundational AI Platform for Biomedical Research Allowing Agents built by the Community

    Rust 3

  2. MedCP MedCP Public

    An MCP server that integrates electronic health record databases and a large-scale heterogeneous knowledge graph for rapid clinical record query and fast biomedical knowledge inference.

    Python 1

  3. tkoi tkoi Public

    Transcriptomic Knowledge-Graph Omics Integration for Human Pathway Analysis

    R 1

  4. KG_RAG KG_RAG Public

    Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

    Jupyter Notebook 939 111

  5. spoke_genelab spoke_genelab Public

    Jupyter Notebook 7 6

  6. SPOKEsigs SPOKEsigs Public

    Jupyter Notebook 2 1

Repositories

Showing 10 of 45 repositories
  • biorouter-landing Public

    The Landing Page of UCSF BioRouter

    BaranziniLab/biorouter-landing’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 16, 2026
  • spoke_genelab Public
    BaranziniLab/spoke_genelab’s past year of commit activity
    Jupyter Notebook 7 BSD-3-Clause 6 0 0 Updated Mar 12, 2026
  • ML3DgenomeHeight Public

    Machine learning reveals 3D regulatory mechanisms for height-associated haplotypes

    BaranziniLab/ML3DgenomeHeight’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Mar 6, 2026
  • BioRouter Public

    Foundational AI Platform for Biomedical Research Allowing Agents built by the Community

    BaranziniLab/BioRouter’s past year of commit activity
    Rust 3 Apache-2.0 0 0 0 Updated Mar 3, 2026
  • CDW_MedCP Public

    MCP server connecting LLMs to a de-identified Epic Caboodle Clinical Data Warehouse via SQL Server

    BaranziniLab/CDW_MedCP’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2026
  • MedCP Public

    An MCP server that integrates electronic health record databases and a large-scale heterogeneous knowledge graph for rapid clinical record query and fast biomedical knowledge inference.

    BaranziniLab/MedCP’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Feb 24, 2026
  • SPOKEAgent Public

    MCP server for SPOKE biomedical knowledge graph

    BaranziniLab/SPOKEAgent’s past year of commit activity
    Python 2 0 0 0 Updated Feb 14, 2026
  • UCSFOMOPAgent Public

    MCP server for UCSF OMOP clinical database

    BaranziniLab/UCSFOMOPAgent’s past year of commit activity
    Python 0 0 0 0 Updated Feb 14, 2026
  • fMedCP Public

    Functional interface with MedCP, using the Claude API key and the MedCP MCP tools

    BaranziniLab/fMedCP’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2026
  • baranzinilab.github.io Public

    Redirects to the Baranzini Lab UCSF main website

    BaranziniLab/baranzinilab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 22, 2026

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