Build container images for GHCR and Dockerhub #294
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| name: Build container images for GHCR and Dockerhub | |
| on: | |
| push: | |
| branches: | |
| - devel | |
| - RELEASE_* | |
| paths-ignore: | |
| - 'extensions/**' | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 18 * * 5' | |
| jobs: | |
| build-amd64: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {image: 'rocker/r-ver', amdtag: '4.5.1', outname: 'r-ver'} | |
| - {image: 'rocker/rstudio', amdtag: '4.5.1', outname: 'bioconductor_docker'} | |
| - {image: 'rocker/tidyverse', amdtag: '4.5.1', outname: 'tidyverse'} | |
| - {image: 'rocker/shiny', amdtag: '4.5.1', outname: 'shiny'} | |
| # - {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda'} | |
| # - {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml'} | |
| # - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse'} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@main | |
| with: | |
| verbose: true | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Extract metadata for container image | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Extract container name without tag | |
| id: vars | |
| run: | | |
| echo container=$(echo '${{ steps.meta.outputs.tags }}' | awk -F':' '{print $1}') >> $GITHUB_OUTPUT | |
| - name: Build and push AMD64 by digest | |
| id: build | |
| uses: docker/build-push-action@v6 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=${{ matrix.base.image }} | |
| amd64_tag=${{ matrix.base.amdtag }} | |
| file: Dockerfile | |
| platforms: linux/amd64 | |
| labels: ${{ steps.meta.outputs.labels }} | |
| outputs: type=image,name=${{ steps.vars.outputs.container }},push-by-digest=true,name-canonical=true,push=true | |
| - name: Export digest | |
| run: | | |
| mkdir -p /tmp/digests | |
| digest="${{ steps.build.outputs.digest }}" | |
| touch "/tmp/digests/${digest#sha256:}" | |
| - name: Upload digest | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-amd64 | |
| path: /tmp/digests/* | |
| if-no-files-found: error | |
| retention-days: 1 | |
| build-arm64: | |
| runs-on: ubuntu-latest-arm64 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {image: 'rocker/r-ver', armtag: '4.5.1', outname: 'r-ver'} | |
| - {image: 'rocker/rstudio', armtag: '4.5.1', outname: 'bioconductor_docker'} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@main | |
| with: | |
| verbose: true | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Extract metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Extract container name without tag | |
| id: vars | |
| run: | | |
| echo container=$(echo '${{ steps.meta.outputs.tags }}' | awk -F':' '{print $1}') >> $GITHUB_OUTPUT | |
| - name: Build and push ARM64 by digest | |
| id: build | |
| uses: docker/build-push-action@v6 | |
| with: | |
| build-args: | | |
| BASE_IMAGE=${{ matrix.base.image }} | |
| arm64_tag=${{ matrix.base.armtag }} | |
| file: Dockerfile | |
| platforms: linux/arm64 | |
| labels: ${{ steps.meta.outputs.labels }} | |
| outputs: type=image,name=${{ steps.vars.outputs.container }},push-by-digest=true,name-canonical=true,push=true | |
| - name: Export digest | |
| run: | | |
| mkdir -p /tmp/digests | |
| digest="${{ steps.build.outputs.digest }}" | |
| touch "/tmp/digests/${digest#sha256:}" | |
| - name: Upload digest | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-arm64 | |
| path: /tmp/digests/* | |
| if-no-files-found: error | |
| retention-days: 1 | |
| merge: | |
| needs: [build-amd64, build-arm64] | |
| runs-on: ubuntu-latest | |
| if: always() | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {image: 'rocker/r-ver', amdtag: '4.5.1', outname: 'r-ver', platforms: 'amd64,arm64'} | |
| - {image: 'rocker/rstudio', amdtag: '4.5.1', outname: 'bioconductor_docker', platforms: 'amd64,arm64'} | |
| - {image: 'rocker/tidyverse', amdtag: '4.5.1', outname: 'tidyverse', platforms: 'amd64'} | |
| - {image: 'rocker/shiny', amdtag: '4.5.1', outname: 'shiny', platforms: 'amd64'} | |
| #- {image: 'ghcr.io/bioconductor/rocker-cuda', amdtag: 'devel-amd64', outname: 'cuda', platforms: 'amd64'} | |
| #- {image: 'ghcr.io/bioconductor/rocker-ml', amdtag: 'devel-amd64', outname: 'ml', platforms: 'amd64'} | |
| #- {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: 'devel-amd64', outname: 'ml-verse', platforms: 'amd64'} | |
| steps: | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Login to Dockerhub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Echo platforms to build | |
| id: buildlist | |
| shell: bash | |
| run: | | |
| PLATFORMLIST="${{matrix.base.platforms}}" | |
| IFS=','; for item in $PLATFORMLIST; do echo "$item=build" >> $GITHUB_OUTPUT; done | |
| - name: Download AMD64 digests | |
| if: steps.buildlist.outputs.amd64 == 'build' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-amd64 | |
| path: /tmp/digests/amd64 | |
| - name: Download ARM64 digests | |
| if: steps.buildlist.outputs.arm64 == 'build' | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: digests-${{ matrix.base.outname }}-arm64 | |
| path: /tmp/digests/arm64 | |
| - name: Set image tags | |
| id: meta1 | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Set image tags | |
| id: meta2 | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| docker.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| ghcr.io/${{ github.repository_owner }}/${{ matrix.base.outname }} | |
| tags: | | |
| type=raw,value={{branch}} | |
| - name: Create manifest list and push with retries | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 10 | |
| shell: bash | |
| command: | | |
| set -x | |
| # Prepare tags | |
| echo '${{ steps.meta2.outputs.tags }}' > /tmp/tags | |
| rm /tmp/tagargs || true | |
| cat /tmp/tags | xargs -i bash -c 'printf "%s" "-t {} " >> /tmp/tagargs' | |
| TAG_ARGS="$(cat /tmp/tagargs)" | |
| TAGS="$(cat /tmp/tags)" | |
| # Add version tags for RELEASE branches (e.g., RELEASE_3_21 -> 3.21) | |
| for tag in $TAGS; do | |
| if [[ "$tag" == *"RELEASE_"* ]]; then | |
| # Extract the version number (e.g., RELEASE_3_21 -> 3.21) | |
| VERSION=$(echo "$tag" | sed -E 's/.*RELEASE_([0-9]+)_([0-9]+).*/\1.\2/') | |
| if [ ! -z "$VERSION" ]; then | |
| # Add the numeric version tag (e.g., 3.21) | |
| REGISTRY=$(echo "$tag" | cut -d':' -f1) | |
| TAG_ARGS="$TAG_ARGS -t ${REGISTRY}:${VERSION}" | |
| fi | |
| fi | |
| done | |
| R_VER=$(docker pull ${{ matrix.base.image }}:${{ matrix.base.amdtag }} 2>&1 > /dev/null && \ | |
| docker inspect ${{ matrix.base.image }}:${{ matrix.base.amdtag }} | \ | |
| jq -r '.[].Config.Env[]|select(match("^R_VERSION"))|.[index("=")+1:]') | |
| if [ ! -z "$R_VER" ]; then | |
| for tag in $TAGS; do | |
| TAG_ARGS="$TAG_ARGS -t ${tag}-R-${R_VER} -t ${tag}-r-${R_VER}" | |
| # For RELEASE branches, also add version-R tags | |
| if [[ "$tag" == *"RELEASE_"* ]]; then | |
| VERSION=$(echo "$tag" | sed -E 's/.*RELEASE_([0-9]+)_([0-9]+).*/\1.\2/') | |
| if [ ! -z "$VERSION" ]; then | |
| REGISTRY=$(echo "$tag" | cut -d':' -f1) | |
| TAG_ARGS="$TAG_ARGS -t ${REGISTRY}:${VERSION}-R-${R_VER} -t ${REGISTRY}:${VERSION}-r-${R_VER}" | |
| fi | |
| fi | |
| done | |
| fi | |
| # Add alternative tags without _docker in name | |
| if [[ "${{ matrix.base.outname }}" == *"_docker"* ]]; then | |
| for tag in $TAGS; do | |
| # Extract registry and branch/version from tag | |
| REGISTRY=$(echo "$tag" | cut -d':' -f1) | |
| VERSION=$(echo "$tag" | cut -d':' -f2) | |
| # Create new registry without _docker suffix | |
| NEW_REGISTRY=$(echo "$REGISTRY" | sed 's/_docker//g') | |
| # Add tag without _docker in name | |
| TAG_ARGS="$TAG_ARGS -t ${NEW_REGISTRY}:${VERSION}" | |
| # If it's a release branch, also add the numeric version tag | |
| if [[ "$VERSION" == RELEASE_* ]]; then | |
| NUM_VERSION=$(echo "$VERSION" | sed -E 's/RELEASE_([0-9]+)_([0-9]+).*/\1.\2/') | |
| if [ ! -z "$NUM_VERSION" ]; then | |
| TAG_ARGS="$TAG_ARGS -t ${NEW_REGISTRY}:${NUM_VERSION}" | |
| fi | |
| fi | |
| # If R_VER exists, add R version tags for the non-_docker version | |
| if [ ! -z "$R_VER" ]; then | |
| TAG_ARGS="$TAG_ARGS -t ${NEW_REGISTRY}:${VERSION}-R-${R_VER} -t ${NEW_REGISTRY}:${VERSION}-r-${R_VER}" | |
| # If it's a release branch, also add R version tags for numeric version | |
| if [[ "$VERSION" == RELEASE_* ]]; then | |
| NUM_VERSION=$(echo "$VERSION" | sed -E 's/RELEASE_([0-9]+)_([0-9]+).*/\1.\2/') | |
| if [ ! -z "$NUM_VERSION" ]; then | |
| TAG_ARGS="$TAG_ARGS -t ${NEW_REGISTRY}:${NUM_VERSION}-R-${R_VER} -t ${NEW_REGISTRY}:${NUM_VERSION}-r-${R_VER}" | |
| fi | |
| fi | |
| fi | |
| done | |
| fi | |
| # Create manifest list | |
| DIGESTS="" | |
| BASE_REGISTRY=$(echo '${{ steps.meta1.outputs.tags }}' | awk -F':' '{print $1}') | |
| for eachdir in $(ls /tmp/digests); do | |
| DIGESTS_ARCH=$(cd /tmp/digests/$eachdir && find . -type f -exec echo "$BASE_REGISTRY@sha256{}" \; | sed 's/\.\//:/') | |
| DIGESTS="$DIGESTS $DIGESTS_ARCH" | |
| done | |
| echo "$TAG_ARGS" | |
| echo "$DIGESTS" | |
| docker buildx imagetools create $TAG_ARGS $DIGESTS | |
| - name: Inspect images | |
| run: | | |
| # Get registry prefixes | |
| REGISTRY_PREFIXES=$(cat /tmp/tags | awk -F':' '{print $1}' | sort -u) | |
| BRANCH=$(cat /tmp/tags | head -1 | awk -F':' '{print $2}') | |
| # Inspect all created tags | |
| for prefix in $REGISTRY_PREFIXES; do | |
| # Base tag | |
| echo "Inspecting: $prefix:$BRANCH" | |
| docker buildx imagetools inspect "$prefix:$BRANCH" | |
| # Without _docker suffix if applicable | |
| if [[ "${{ matrix.base.outname }}" == *"_docker"* ]]; then | |
| NO_DOCKER_PREFIX=$(echo "$prefix" | sed 's/_docker//g') | |
| echo "Inspecting: $NO_DOCKER_PREFIX:$BRANCH" | |
| docker buildx imagetools inspect "$NO_DOCKER_PREFIX:$BRANCH" | |
| fi | |
| # Version tag for release branches | |
| if [[ "$BRANCH" == RELEASE_* ]]; then | |
| VERSION=$(echo "$BRANCH" | sed -E 's/RELEASE_([0-9]+)_([0-9]+).*/\1.\2/') | |
| if [ ! -z "$VERSION" ]; then | |
| echo "Inspecting: $prefix:$VERSION" | |
| docker buildx imagetools inspect "$prefix:$VERSION" | |
| # Without _docker suffix if applicable | |
| if [[ "${{ matrix.base.outname }}" == *"_docker"* ]]; then | |
| echo "Inspecting: $NO_DOCKER_PREFIX:$VERSION" | |
| docker buildx imagetools inspect "$NO_DOCKER_PREFIX:$VERSION" | |
| fi | |
| fi | |
| fi | |
| done | |
| trigger-extensions: | |
| needs: [merge] | |
| runs-on: ubuntu-latest | |
| if: success() | |
| steps: | |
| - name: Trigger extensions workflow | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const branch = context.ref.replace('refs/heads/', ''); | |
| await github.rest.actions.createWorkflowDispatch({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| workflow_id: 'build_extensions.yaml', | |
| ref: branch | |
| }); | |
| console.log(`Triggered build_extensions.yaml workflow on branch ${branch}`) |