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@Breeding-Insight

Breeding Insight

Combining genomics and informatics to accelerate genetic gains.

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  1. bi-web bi-web Public

    TypeScript 7 1

  2. bi-api bi-api Public

    Java 8 1

  3. brapi brapi Public

    A java project with modules to interact with BrAPI data.

    Java 4 1

  4. bi-docker-stack bi-docker-stack Public

    Shell 3

Repositories

Showing 10 of 56 repositories
  • Alfalfa_ARR_QTL Public

    Scripts for Aphanomyces root rot QTL mapping and candidate gene prioritation.

    Breeding-Insight/Alfalfa_ARR_QTL’s past year of commit activity
    R 0 0 0 0 Updated Jan 12, 2026
  • BIGapp Public

    The BIG app is a user-friendly R Shiny app to analyze genomic data without needing to use command-line tools and works across different species ploidy.

    Breeding-Insight/BIGapp’s past year of commit activity
    R 5 Apache-2.0 7 1 2 Updated Jan 11, 2026
  • bi-api Public
    Breeding-Insight/bi-api’s past year of commit activity
    Java 8 Apache-2.0 1 0 15 Updated Jan 9, 2026
  • bi-web Public
    Breeding-Insight/bi-web’s past year of commit activity
    TypeScript 7 Apache-2.0 1 0 22 Updated Jan 8, 2026
  • AlloMate Public

    AlloMate is a shiny app that simplifies mate allocation decisions for breeders.

    Breeding-Insight/AlloMate’s past year of commit activity
    JavaScript 0 1 1 0 Updated Jan 7, 2026
  • nemaquant Public
    Breeding-Insight/nemaquant’s past year of commit activity
    JavaScript 0 Apache-2.0 0 0 1 Updated Dec 19, 2025
  • bi-docker-stack Public
    Breeding-Insight/bi-docker-stack’s past year of commit activity
    Shell 3 0 0 0 Updated Dec 19, 2025
  • BIGr Public

    This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data

    Breeding-Insight/BIGr’s past year of commit activity
    R 3 Apache-2.0 4 0 2 Updated Dec 14, 2025
  • dartag_alleles Public

    Building allele database from DArTag missing allele discovery count files

    Breeding-Insight/dartag_alleles’s past year of commit activity
    Python 0 0 0 0 Updated Nov 23, 2025
  • BI_Genotype_IDs_Generator Public

    ShinyApp to generate sample tracking files needed for BI-DArT workflow

    Breeding-Insight/BI_Genotype_IDs_Generator’s past year of commit activity
    R 0 0 0 0 Updated Nov 14, 2025
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