Fix requirements.txt issues

environment.yml

@@ -0,0 +1,25 @@
+name: pulmonary-tree-labeling
+channels:
+  - pytorch
+  - nvidia
+  - conda-forge
+  - defaults
+dependencies:
+  - python=3.9
+  - pip
+  - pytorch=1.13.0
+  - torchvision=0.14.0
+  - torchaudio=0.13.0
+  - pytorch-cuda=11.7
+  - numpy
+  - pillow
+  - requests
+  - tqdm
+  - networkx
+  - psutil
+  - pip:
+    - torch-geometric==2.6.1
+    - monai==1.4.0
+    - nibabel==5.3.2
+    - openpyxl==3.1.5
+    - cupy-cuda12x==13.3.0

requirements.txt

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+# Python dependencies for pulmonary-tree-labeling
+# Install with: pip install -r requirements.txt
+
+# Deep Learning
+torch>=1.13.0
+torchvision>=0.14.0
+torchaudio>=0.13.0
+torch-geometric==2.6.1
+
+# Medical Imaging
+monai==1.4.0
+nibabel==5.3.2
+
+# Data Processing
+numpy>=1.26.0
+pillow>=10.0.0
+openpyxl==3.1.5
+
+# Utilities
+tqdm>=4.66.0
+networkx>=3.0
+psutil>=6.0.0
+requests>=2.32.0
+
+# Optional: GPU acceleration (requires CUDA)
+# cupy-cuda12x==13.3.0