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HKU CDS BioAI Laboratory

Research group led by Ruibang Luo in Computer Science, HKU. Previously known as "HKUCS Bioinformatics Algorithms Lab".

62 followers
Hong Kong
http://www.bio8.cs.hku.hk/
@aquaskyline
rbluo@cs.hku.hk

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Clair3 Clair3 Public

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Python 310 35
ClairS ClairS Public

ClairS - a deep-learning method for long-read somatic small variant calling

Python 95 9
ClairS-TO ClairS-TO Public

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Python 71 4

Repositories

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Showing 10 of 34 repositories

Clair-Mosaic Public
Clair-Mosaic - a deep-learning method for long-read mosaic small variant calling

HKU-BAL/Clair-Mosaic’s past year of commit activity

Python 4 BSD-3-Clause 0 0 0 Updated Nov 4, 2025
Gungnir Public
Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power

HKU-BAL/Gungnir’s past year of commit activity

Go 11 BSD-3-Clause 0 0 0 Updated Oct 29, 2025
ClairS-TO Public
ClairS-TO - a deep-learning method for tumor-only somatic variant calling

HKU-BAL/ClairS-TO’s past year of commit activity

Python 71 BSD-3-Clause 4 4 0 Updated Oct 13, 2025
Clair3 Public
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

HKU-BAL/Clair3’s past year of commit activity

Python 310 35 11 0 Updated Sep 25, 2025
ClusterV-Web Public

HKU-BAL/ClusterV-Web’s past year of commit activity

C 3 BSD-3-Clause 0 0 0 Updated Aug 22, 2025
Clair3-Nova Public
de novo variant calling in trio using Nanopore long-reads

HKU-BAL/Clair3-Nova’s past year of commit activity

Python 14 BSD-3-Clause 0 1 0 Updated Aug 11, 2025
Governome Public
Governome - Towards a new standard in genomic data privacy: a realization of owner-governance

HKU-BAL/Governome’s past year of commit activity

Go 5 BSD-3-Clause 0 0 0 Updated Aug 8, 2025
AutoPM3 Public

HKU-BAL/AutoPM3’s past year of commit activity

Python 15 MIT 2 0 0 Updated Jul 28, 2025
ClairS Public
ClairS - a deep-learning method for long-read somatic small variant calling

HKU-BAL/ClairS’s past year of commit activity

Python 95 BSD-3-Clause 9 6 0 Updated Jul 9, 2025
Clair3-RNA Public
Clair3-RNA - a long-read small variant caller for RNA sequencing data

HKU-BAL/Clair3-RNA’s past year of commit activity

Python 32 BSD-3-Clause 2 6 0 Updated Apr 8, 2025

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