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WIP: Auger-less SWIF class#413

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WIP: Auger-less SWIF class#413
baltzell wants to merge 1 commit intomasterfrom
iss412-augerless-swif

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baltzell commented Aug 27, 2024

Here's a "minimal" example JSON for a 1-job SWIF workflow:

x.json

{
  "name": "rga-dr-newDCCl-5595",
  "site": "jlab/enp",
  "max_dispatched": 10000,
  "jobs": [
    {
      "constraint": "el9",
      "name": "rga-dr-newDCCl-5595-p0-d-00001",
      "phase": 0,
      "account": "hallb-pro",
      "partition": "production",
      "shell": "/bin/tcsh",
      "cpu_cores": 1,
      "ram_bytes": 4000000000,
      "disk_bytes": 4000000000,
      "time_secs": 21600,
      "command": [
        "unalias -a ; set echo; mkdir -p /farm_out/clas12/rga-dr-newDCCl-5595 ; touch /farm_out/clas12/rga-dr-newDCCl-5595 ;env | egrep -e SWIF -e SLURM ;echo $PWD ; pwd ;expr $PWD : ^/scratch/slurm && setenv JAVA_HOME \"/scigroup/cvmfs/hallb/clas12/soft/linux-64/jdk/17.0.2\" && setenv PATH \"${JAVA_HOME}/bin:${PATH}\" && setenv CCDB_CONNECTION \"mysql://clas12reader@clasdb-farm.jlab.org/clas12\" && setenv RCDB_CONNECTION \"mysql://rcdb@clasdb-farm.jlab.org/rcdb\" && setenv MALLOC_ARENA_MAX \"2\" && ls -l && mkdir -p /volatile/clas12/user/caot/experiment/updateDCClustering_noCutHBConvTracking/rga_fall2018/decoded/005595  && (  set o=clas_005595.evio.00000.hipo ; set i=clas_005595.evio.00000 ; /work/clas12/users/caot/updateDCClustering_test/coatjava/coatjava/bin/decoder -c 2 -s -1.0000 -t 1.0000 -o $o $i && ls $o && if (`stat -c%s $o` < 100) rm -f $o && /work/clas12/users/caot/updateDCClustering_test/coatjava/coatjava/bin/hipo-utils -test $o || rm -f $o ; ls $o )"
      ],
      "tags": [
        {
          "name": "run",
          "value": "005595"
        },
        {
          "name": "file",
          "value": "00000"
        }
      ],
      "inputs": [
        {
          "local": "clas_005595.evio.00000",
          "remote": "mss:/mss/clas12/rg-a/data/clas_005595/clas_005595.evio.00000"
        }
      ],
      "outputs": [
        {
          "local": "clas_005595.evio.00000.hipo",
          "remote": "file:/volatile/clas12/user/caot/experiment/updateDCClustering_noCutHBConvTracking/rga_fall2018/decoded/005595//clas_005595.evio.00000.hipo"
        }
      ],
      "stdout": "/farm_out/clas12/rga-dr-newDCCl-5595/rga-dr-newDCCl-5595-p0-d-00001_r005595_f00000.out",
      "stderr": "/farm_out/clas12/rga-dr-newDCCl-5595/rga-dr-newDCCl-5595-p0-d-00001_r005595_f00000.err"
    }
  ]
}

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