Update proteomics example data with collection sites and update all tutorials accordingly

.github/workflows/cicd.yml

@@ -7,9 +7,8 @@ on:
     branches: [main]
   release:
     types: [published]
-
-jobs:
 
+jobs:
   format:
     runs-on: ubuntu-latest
     steps:
@@ -36,25 +35,20 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [
-          "3.9",
-          "3.10", 
-          "3.11",
-          "3.12",
-          "3.13"
-        ]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+      fail-fast: false
     steps:
-    - uses: actions/checkout@v4
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        pip install --upgrade pip
-        pip install ".[dev]"
-    - name: Test with pytest
-      run: python -m pytest tests
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          pip install --upgrade pip
+          pip install ".[dev]"
+      - name: Test with pytest
+        run: python -m pytest tests
 
   build_source_dist:
     name: Build source distribution
@@ -77,7 +71,6 @@ jobs:
         with:
           path: ./dist/*.tar.gz
 
-
   publish:
     name: Publish package
     if: startsWith(github.ref, 'refs/tags')