730 retinal oct rpd segmentation #2352
Workflow file for this run
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| name: premerge-cpu-check | |
| on: | |
| # code format check for pull requests and the dev branch | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: premerge-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| premerge-cpu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.10.14 # This will be the default Python | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| # The python-version here is for Conda's base, if activated. | |
| # We set auto-activate-base to false, so actions/setup-python's version remains default. | |
| python-version: 3.10.14 | |
| auto-activate-base: false # Crucial: ensures the Python 3.10 from actions/setup-python is the default | |
| - name: Initialize Conda for shell integration | |
| shell: bash | |
| run: | | |
| conda init bash | |
| eval "$(conda shell.bash hook)" | |
| - name: cache weekly timestamp | |
| id: pip-cache-ts | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| - name: Get pip cache directory | |
| id: pip-cache-dir | |
| # This runs using the default Python (3.10) | |
| shell: bash | |
| run: echo "dir=$(python -m pip cache dir)" >> $GITHUB_OUTPUT | |
| - name: Cache pip dependencies (for Python 3.10 global env) | |
| uses: actions/cache@v4 | |
| id: cache-pip | |
| with: | |
| path: ${{ steps.pip-cache-dir.outputs.dir }} | |
| key: ${{ runner.os }}-pip-3.10-${{ steps.pip-cache-ts.outputs.datew }}-${{ hashFiles('**/requirements.txt', '**/setup.py') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip-3.10-${{ steps.pip-cache-ts.outputs.datew }}- | |
| # Cache Conda packages (for environments your bash script might create) | |
| # setup-miniconda action sets MINICONDA_PATH_0 environment variable | |
| - name: Cache Conda packages | |
| uses: actions/cache@v4 | |
| id: cache-conda | |
| with: | |
| path: ${{ env.MINICONDA_PATH_0 }}/pkgs | |
| key: ${{ runner.os }}-conda-pkgs-${{ steps.pip-cache-ts.outputs.datew }}-${{ hashFiles('**/environment*.yml', '**/requirements*.txt') }} # Adjust hashFiles as needed | |
| restore-keys: | | |
| ${{ runner.os }}-conda-pkgs-${{ steps.pip-cache-ts.outputs.datew }}- | |
| - name: Install global Python dependencies (using Python 3.10) | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install --upgrade setuptools | |
| - name: Run check script | |
| shell: bash -el {0} | |
| run: | | |
| # clean up temporary files | |
| $(pwd)/runtests.sh --clean | |
| df -h | |
| bash $(pwd)/ci/run_premerge_cpu.sh |