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This repository was archived by the owner on Dec 27, 2023. It is now read-only.

ReddyLab/cov_viz

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Archived

This repository has been archived in favor of ccgr_portal_cov_viz

Description

Generate experiment coverage visualization data from the CCGR Portal database.

Usage

cov_viz <output directory> <experiment accession id> <assembly name ("GRCH37" or "GRCH38")> [bucket size (2,000,000 default)] [chromosome]

The database connection URL is set using the DATABASE_URL environment variable, matching the django environment this may be running in.

Build

Run cargo build

Installation

Run cargo install --path .

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Generate data used by the CCGR Portal experiment coverage visualizer

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