Requirements

• Python 3.6+
• requests

Installation

Clone the repository with git clone https://github.com/ReddyLab/encode_cart.git then change into the repository directory. Optionally, you can create a virtual environment. Finally, run pip install -r requirements.txt.

Run

python encode_cart.py --name "Cart Name" --authfile auth_file.txt --accessions accession_file.txt

Arguments

• --name/-n: The name of the cart
• --auth_file/-f: A file with your access key access key id
• --accessions/-a: A file with a list of accession ids
• --test: Use the test server instead of production.

Auth File

This file should have just one line, with your Access key ID and Access key on it, separated by a space. Example:

7SD5D1D7 ertyuiol7kjnbvcd4rt

Accession File

This file should have one access ID per line. The accession IDs should be of the format /accession-type/ID/. Example File:

/functional-characterization-experiments/ENCSR476KHP/
/experiments/ENCSR216YPQ/