JSOM

Expect script for connecting to Jupyter notebooks on DASH/SOM-HPC

Install

To install jsom run:

git clone https://github.com/ReddyLab/jsom.git
cd jsom
make install

Prerequisites

• Python 3.8
• Public key authentication set up for DASH/SOM-HPC

This should work on Mac, may work on Linux, and probably doesn't work on Windows.

Uninstall

make uninstall

Usage

jsom [-h] -a ADDRESS -u USERNAME -k KEY -c CONDA [-m MEM] [-t TIME] [--cpus-per-task CPUS_PER_TASK]

Options

-h, --help                       show this help message and exit
-a ADDRESS, --address ADDRESS    address of ssh server
-u USERNAME, --username USERNAME ssh username
-k KEY, --key KEY                private key file to use
-c CONDA, --conda CONDA          conda environment containing jupyter server to activate
-d, --debug                      echo all output to stdout
-m MEM, --mem MEM                amount of memory allocated to jupyter job
-t TIME, --time TIME             amount of time jupyter job will be allowed to run
--cpus-per-task CPUS_PER_TASK    number of CPUs allocated to jupyter job