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Installation FAQ: created a document to specify any common installation issues and questions. Should be continuously updated based on logged issues and questions. Not specific to any model. RFD3: - changed the checkpoint files specified in the examples to rfd3_latest.ckpt - updated information in input.md to clarify information based on recent issues that had been submitted
RF3 and MPNN: folders, index files, and symlinks were created in order to provide space for eventual RF3 and MPNN docs. Several small changes in the RFD3 README to improve readability and add a pointer to the PPI tutorial as a starting point for someone new to RFdiffusion tools.
…index Made changes based on edits from Saman, added images, and created zip file containing sample outputs for an enzyme design tutorial. I am waiting on edits for the NA binder design tutorial, so for now I have removed it from the documentation index.
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With the help of Saman Salike, I have created an enzyme design tutorial for the RFD3 documentation. This PR also includes minor edits to the PPI tutorial files.